Candidatus Planktophila dulcis: A1s21155_03030
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Entry
A1s21155_03030 CDS
T05051
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
plak
Candidatus Planktophila dulcis
Pathway
plak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1s21155_03030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plak03400
]
A1s21155_03030
DNA repair and recombination proteins [BR:
plak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1s21155_03030
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A1s21155_03030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_16
AAA_29
RsgA_GTPase
nSTAND1
DnaJ_CXXCXGXG
NACHT
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ASY11947
UniProt:
A0AAC9YSX9
LinkDB
All DBs
Position
595671..598562
Genome browser
AA seq
963 aa
AA seq
DB search
MSIDKLVVRGAREHNLKDVSIELPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLS
AYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYFRLLFARAGRP
HCPECGKAVSRQSPQQIVDQILTMPATTKFQILAPVIRERKGEFVDLFAELVTQGYSRAR
VDGETIQLTEPPKLKKQEKHTIEVVIDRLTAKAESKSRLTDSIETALRLGNGLVLLDFVD
AKTGEKEHTYSEHLACHDCNLSFEELEPRSFSFNSPFGACVECSGIGTKLEVDEDLIIPD
DSISINEGAIAPWTGAQSSEYFLRLLEALATELKFSMDNPWKKLSVKAKEAIINGFDYEV
HVKYKNRYGRVRNYSTGFEGVVPFIHRRHSETDSDYSRDKYEAYMRETPCPACKGARLKP
EVLAVTLGGKSIAEVCALSIDDCATFLKQVTLNKREAQIAERVMKEVHARLGFLLDVGLD
YLSLDRPAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD
LGNTLIVVEHDEETIRTADWVVDIGPGAGEHGGKVVVSGSYEELIASKESITGAYLSGRK
SIEIPKTRRPIDLKRQLVIKGAKENNLKDIEVSIPLGLFVSVTGVSGSGKSTLVNDILYT
TLANKLNGARLVPGRHRTVTGIDQLDKVVHVDQSPIGRTPRSNPATYTGVFDKVRALFAE
TTEAKVRGYQQGRFSFNVKGGRCENCSGDGTITIEMNFLPDVYVPCEVCHGARYNRETLE
VHYKGKTIAQVLDMPIEIAHTFFESVPTIARYLKTLCDVGLGYVRLGQSAPTLSGGEAQR
VKLATELQRRSTGRTIYVLDEPTTGLHFEDVNKLLGVLKRLVESGNTVIVIEHNLDVIKS
SDWVIDMGPEGGFRGGLVVAEGTPEEVAKVKASYTGQYLAEILATNRAATATKTAPRKTA
QKK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgataagttagtagttcgtggagcacgcgaacataatcttaaagatgtctca
attgaacttcctcgcgatgcgctgattgtctttactggtctttctggttcaggtaaatca
agccttgcattcgacaccatctttgctgaaggccagcgccgctatgtggagtccctttct
gcctatgcacgtcaattcttggggcagatggataagcctgatgttgatttcattgaagga
ctctcacctgcagtctccatcgatcagaaatctaccaaccgaaacccgcgttcaacggtg
ggaaccattactgaggtctatgactatttccgtctgctctttgctcgcgcagggcgacca
cattgtcccgagtgcggcaaggcagtctctcgccagagcccgcaacagattgttgatcaa
attctcacgatgcctgccacaacgaagtttcaaattcttgctcccgttattcgcgaacgc
aagggtgaatttgtcgatctctttgcagagctagtcacacagggctattcccgggctcga
gttgatggggaaacaattcaactgactgaaccaccaaagctcaaaaaacaagagaagcac
accattgaagtggtcattgatcgtctgactgcaaaggctgagagtaagtcacgtcttaca
gattcgattgagactgctctgcgtctaggtaatggtcttgttcttctggactttgttgat
gccaaaaccggcgagaaggagcatacatatagcgagcaccttgcatgccacgattgcaat
ctctcctttgaagagctcgaaccacgttcattctcatttaactcaccctttggtgcatgt
gttgaatgttcaggaattggaacgaagttagaagttgatgaagatctgatcatccctgat
gactccatctccattaatgaaggcgccattgcgccatggactggggcacaatcctctgaa
tacttcctgcgtctgcttgaagcgttagcaactgaactgaaattctcgatggataaccca
tggaagaagctttcggttaaagccaaggaagcgatcatcaatggctttgattatgaagtt
cacgttaaatacaagaaccgttatggccgagtgcgtaattactccacaggctttgaaggc
gtagttccctttatccatcgccgccatagtgagactgatagcgattacagccgtgataag
tacgaggcatatatgcgtgagacaccatgtcctgcatgtaagggagcaagactcaagcct
gaagtattggctgtaactctcggtggtaagagcattgctgaggtgtgcgctctctctatt
gatgattgtgcaactttcttgaagcaagtaactttgaataagcgtgaggcgcagattgca
gagcgtgtcatgaaggaagttcatgctcgtcttggcttccttcttgatgtcggtcttgat
tacctttcacttgatcgccctgcagcaacgctttcaggtggtgaagcacaacgtattcgt
cttgccactcagattggttcagggttagtcggtgttctctatgtcttggatgagccttcc
attggtctgcatcagcgtgataatcgtcgtttgattgagactctgactcgtctacgcgat
cttggaaacaccctcattgttgttgagcatgatgaggagacgattcgcacagctgattgg
gtggtcgatattgggccaggggctggcgaacacggtggcaaagttgttgtctcaggttcc
tatgaagaacttattgcatcaaaggaatctattacaggtgcctacttatcaggacgtaaa
tcaattgagattccaaagacgcgcagaccaattgatctcaaacgccaacttgtcattaaa
ggtgccaaagagaataacctcaaagatattgaagtatcaattccactcggtctctttgtc
tcagtcacaggagtttcaggctctggtaaatcaacactagttaatgacattctctataca
actcttgccaacaaactcaacggtgcgcgtttggtgccgggtcgccacagaactgtgacg
ggtatcgatcaactcgacaaagttgtgcatgtggatcaatcaccgattggtcgcacacca
cgttctaaccctgctacttatacgggtgtattcgataaagtccgtgcgctctttgctgag
acaacggaggcaaaggttcgtggttaccagcaagggcgcttctcattcaatgtgaagggc
ggacgctgcgagaattgttcaggcgatggaactatcacgattgagatgaacttcctgcct
gatgtctatgttccttgcgaagtgtgtcacggtgctcgctataaccgcgagactttagaa
gttcactacaagggcaagacgattgctcaagttctcgatatgcctatcgaaattgctcat
acattctttgagtcagtgccaacgattgctcgttacctgaagactctctgcgatgtgggg
cttgggtatgtgcgcttgggtcagtcagcacccactctgtcaggtggagaagcacagcgc
gtgaagcttgctaccgaacttcagcgtcgatcaactggccgcacgatctatgttctagat
gaaccaactactggtctgcactttgaagatgtgaataaacttttgggtgttctcaagcgc
ctagtggaatcaggaaatacagtgatcgtgattgagcataatctcgatgtcattaagtca
tctgactgggtcatcgatatgggtcctgaaggtggattccgcgggggattagttgttgcc
gagggaactcccgaagaggtagcaaaggtgaaggcaagttatacgggtcagtacttagct
gagattcttgcgactaatcgtgcagcaactgccacaaagactgccccacgtaaaactgca
caaaagaagtag
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