Metapseudomonas lalkuanensis: FXN65_01705
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Entry
FXN65_01705 CDS
T07120
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plal
Metapseudomonas lalkuanensis
Pathway
plal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXN65_01705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plal03019
]
FXN65_01705
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FXN65_01705
Messenger RNA biogenesis [BR:
plal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FXN65_01705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEY60820
UniProt:
A0A5J6QE74
LinkDB
All DBs
Position
complement(359768..361732)
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AA seq
654 aa
AA seq
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MSFASLGLSEALVGAVEAAGYAKPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPVL
ELLFPNGHHDKSQRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSTCIFGGVGMN
PQVQALSKGVDLLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANRLLHDPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITVGAWEQVLVFTRTKHGANRLAEYLTKHGLAAAAIHGNKSQNARTKALADFKANEV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKAIERLTKQKIPDGDTQGFDPATVEAERPEARPPRPERQPRADKPKREAKAAAPQAPAE
GKEANAEGAAEGKPRKSRNRRRGKGKGPDQEQGQGQQAAGQRQQQPKQPKPARPPQPAAD
RDPEEFLDDEIDNFGNRVDYVSPYPPKGQGRNQRRGGQGQGQGQRQQGQAQQGQGRSGGA
QGQGRSGGQGRSQGQGSGSNQGQRQGGQKQGQQRQGQGKAAKGRGNGQRRSDDQLVSRGR
DEPAVQDPRANKPAPKIIMKESRADRYPTPEQLDELQQSSRPRGEKPALLTRNR
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggcattggtcggcgccgtcgaagccgccggc
tacgccaagcccactcccgtgcaacagcgggcgattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcccagactggcaccggcaagaccgccggtttcgccctgcccgttctg
gaactgctgttccccaacggtcaccacgacaaatcccagcgccatggcccgcgccaggcg
cgcgttctggtcctgacgccgacccgcgaactggcggcacaggtccacgacagcttcaag
ctctacgcccgtgacctgaaactggtcagtacctgcatcttcggcggcgtcggcatgaat
ccccaggtgcaggccctctccaagggcgtggacctgctggtggcctgccccggccgcctg
ctcgacctggccggtcagggcagcgtcgacctctcccatgtggaaatcctcgtgctcgac
gaagccgaccggatgctcgacatgggcttcatccacgacgtgaagaaggtcctcgccaag
ctcccgcccaagcgccagaacctgctgttctcggcaaccttctcaaaagacatcgtcgac
ctcgccaacaggctgctgcacgatcccgaacgcatcgaagtgaccccgccgaacaccacg
gtggagcgcatcgagcagcgcgtgttccgtctccccgccagtcacaagcgcgccctgctg
gcgcacctgatcactgtcggcgcatgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtatctgaccaagcacggcctggccgccgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaacgaggtg
cgcatcctggtggccaccgacatcgcggcccgtggcctggacatcgaccaattgccccat
gtagtcaacttcgagctgcccaacgtcgaggaagactacgtgcaccgcattggccgtacc
ggtcgtgccggtcgcagcggcgaagccatctccctggtcgcgccggatgaagagaagctg
ctgaaggccatcgagcgcctgaccaagcagaagatcccggacggcgatacccagggcttc
gacccggcgaccgtcgaggccgagcgtcccgaagcgcgcccgccgcgccccgagcgccag
ccgcgtgccgacaagcccaagcgcgaagccaaggccgccgcgccgcaggcgcccgccgaa
gggaaggaagccaatgccgaaggcgccgcagaaggcaagccgcgcaagagccgtaatcgc
cgtcgtggcaagggcaaggggccggaccaggaacaaggccagggccagcaggcagccggc
cagcgtcagcagcagcccaagcagcccaagccggcgcgtccgccgcagccagccgccgac
cgtgatccggaagaattcctcgacgacgaaatcgacaacttcggcaatcgtgtcgactac
gtcagcccctatccacccaagggccagggtcgcaaccagcgccgtggtggccagggccag
ggccagggccagcgccagcagggtcaagcccagcaaggtcagggccgtagtggtggcgct
cagggtcaaggccgtagcggaggtcagggccgcagccagggccagggaagtggcagcaac
cagggccagcgccagggtggccagaagcagggccagcagcgccagggtcagggcaaggcg
gccaaggggcgcggcaacggccagcgccgtagtgacgatcaactggtgtcccgtggtcgc
gacgagcctgccgtgcaggatccccgagccaacaagccggcaccgaagatcatcatgaaa
gagtcccgcgccgaccgttacccgactccggagcaactggacgaactgcaacagagcagc
cgcccgcgcggcgagaaaccggcattgctgacccgcaatcgctga
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