Metapseudomonas lalkuanensis: FXN65_03820
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Entry
FXN65_03820 CDS
T07120
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
plal
Metapseudomonas lalkuanensis
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plal03019
]
FXN65_03820 (hrpB)
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FXN65_03820 (hrpB)
Messenger RNA biogenesis [BR:
plal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FXN65_03820 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
ResIII
AAA_30
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QEY61218
UniProt:
A0A5J6QEP7
LinkDB
All DBs
Position
793004..795526
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AA seq
840 aa
AA seq
DB search
MNPLPIDAVLPDLRAALQSRDEAVLEAPPGAGKTTRVPLALLGEPWLAGQSILMLEPRRL
AARAAAERLASELGEAVGETVGYRIRLESKVGPRTRIEVVTEGILARRLQEDPALEGVGL
VIFDEFHERSLDADLALALCLNGRALLRDEPPLKVLLMSATLEGERLSRLLAEAPVVRSE
GRMFPVEQRWSRPSQVGEALEPRVVQTVLQALADEPGSLLVFLPGQAEIRRVTEQLAERL
DGRPEILLCPLHGELDLAAQRAAIEPAPVGKRKVVLATNIAETSLTIDGVRVVVDAGLER
VPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGACYRLWSEAQHEQLAAHGSAEILQ
ADLAGLALQLARWGVGDPNELAWLDPPPAAAYAQGRDLLRRLGALAEDGSLTRHGQAMAE
LPAHPRIAHLLLRGQALGLGTLACDLAALLGERDILRGGGADLHSRLALLAGEDKAARGA
RGGVQRARQLARQFRSYLRGPAGEPVADPDHPRWLGCLLAFAYPDRVAQQRRAGGADYRL
ANGRAATFGEPDALMKEPWLVIADLGSRQGQREERIYLAADLDPALFDGPLAEQVSRHDL
LDWDEREGVLRAERQVKVGELVLTREALAELDDEARSRALLGLVRRKGLELLPWNPELRQ
WQARVALLRRLDLADKGSSEWPDLSDAALLASLEDWLQPWLGKVSRLSHFANLDLAGILQ
GLLPWPLPQRLDELAPRTLEVPSGSRIRLDYSDEMPVLAVRLQELFGLAETPRIAGGRQG
VKLHLLSPAQRPVQVTQDLASFWRNTYADVKKDLKGRYPKHYWPDDPLVAEPTARAKPRK
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgctacccatcgatgccgtcctgcccgacctgcgggccgccctgcaatcccgc
gacgaagccgtactggaagcgccgcccggcgccggcaagaccacccgcgtgcccctggcg
ttgctgggcgagccgtggctggccgggcagagcatcctgatgctggagccgcgtcgcctg
gctgcccgcgccgcagccgaacgcctggccagcgaactgggggaggccgtgggcgaaacc
gtcggctaccgcatccgcctggagtcgaaggtcggtccgcgcacccgcatcgaggtggtg
acggagggcatcctcgcccgccgcttgcaggaggatccggcactggaaggcgtgggtctg
gtgatcttcgacgaatttcacgagcgtagcctggacgcggacctcgccctggccctgtgc
ctcaatggccgagcgctgctgcgcgacgaaccgccgctgaaggtgctgttgatgtccgcc
accctggagggagagcgcctgtcgcgcctgctggcggaggcgcccgtggtgcgcagcgaa
ggccgcatgttcccggttgagcagcgttggagccgcccgagtcaggtgggggaggcgctc
gaacccagggtggtgcagaccgtgctccaggccctggctgacgaacccggcagcttgctg
gtgttcctcccggggcaggctgagattcgtcgcgtcaccgaacagttggccgagcgcctc
gatggccggcccgagattctgctgtgcccgctccacggtgaactggacctggccgcccag
cgcgccgccatcgagcctgcgcccgtgggcaagcgcaaggtggtgctggccaccaacatc
gccgaaaccagcctgaccatcgatggcgtgcgcgtagtggtcgatgccggcctggagcgc
gtgccgcgcttcgacccggccagcggcatgacccgcctggacactcagcgtatttcccgg
gcctcggcgacccagcgcgccggccgggccgggcgcctgcagccgggcgcctgctaccgg
ctctggtccgaggcccagcatgaacaactggcggcccacggcagtgcggaaatcctccag
gccgatctcgccggcctggcgctgcaactggctcgttggggcgttggcgatcccaacgag
ctggcctggctcgatccgccccccgccgccgcctatgcccagggccgcgacctgttgcgg
cggctcggtgccctggccgaggacggcagcctgacccgccatggccaggccatggccgaa
ctgccggctcacccgcgcatcgcccacctgttgctgcgtggtcaggcgctcgggctcggc
accctggcctgcgacctcgccgccctgttgggcgagcgagacatcctgcgtggcggcggg
gccgacctgcacagccgcctggccctgttggccggtgaagacaaggcagcgcgcggggct
cgtggcggcgtgcagcgcgcgcgccagttggcgcggcagttccgctcctacctgcgtggc
ccggccggcgagccggtggccgacccggatcacccgcgctggctcggctgcctcttggcc
ttcgcctacccggaccgcgtcgcccagcagcgccgcgcgggcggtgccgactaccgcctg
gccaacggccgcgcggcgaccttcggcgaacccgacgcactgatgaaggaaccctggctg
gtgatcgccgacctcggcagccgccagggccagcgcgaggagcgcatctatctcgctgcc
gacctcgacccggcgctgttcgacggtcccctggccgaacaggtgagtcgccacgacctg
ctggactgggacgagcgtgaaggcgtgctgcgtgccgagcggcaggtgaaagtgggtgag
ctggtgctgacccgtgaagccctggccgaactggatgacgaggcgcgctcgcgggcattg
cttggcctggttcgacgcaaggggctggagctgttgccgtggaatcccgagctgcgccag
tggcaggcgcgggtggcgctgctgcgccggttggatctggccgacaagggcagcagcgaa
tggccggacctctccgacgcggccctgctggccagcctggaagactggctgcagccctgg
ctgggcaaggtcagccgcctcagccatttcgccaacctcgacctcgccggcattctccag
ggcttgctgccctggccgctgccacagcggctcgacgaactggcgccgcgcacgctggaa
gtgccatccggctcgcgtatccgcctcgattacagcgacgagatgccggtgctcgccgtg
cgcctgcaggaactgttcggcctggctgaaacgcctcgcatcgctggtggccgtcagggc
gtcaagctgcacctgctctccccggcccagcgcccggtgcaggtcacccaggacctggcg
agcttctggcgcaatacctacgcggatgtgaagaaggatctgaagggccgttaccccaag
cactactggccggacgatccgctggtggccgagccgaccgcacgggccaagccgaggaag
tag
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