Metapseudomonas lalkuanensis: FXN65_03885
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Entry
FXN65_03885 CDS
T07120
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plal
Metapseudomonas lalkuanensis
Pathway
plal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXN65_03885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plal03019
]
FXN65_03885
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FXN65_03885
Messenger RNA biogenesis [BR:
plal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FXN65_03885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEY61229
UniProt:
A0A5J6QL07
LinkDB
All DBs
Position
804040..805368
Genome browser
AA seq
442 aa
AA seq
DB search
MTFASLGLIEPLLRATEALGYQTPSPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QKLTQEGPQVASNSVRALVLVPTRELAEQVNESFRVYGQHLPLRNYAVYGGVSINPQMMK
LRKGIDVLVATPGRLLDLYRQNAVKFNQLQVLVLDEADRMLDLGFARELDELFAALPKRR
QTLLFSATFSDAIRQMAGELLRDPLSIEVSPRNAAAKSVRQWLIPVDKKRKSELFLHLLE
NRGWGQVLVFAKTRKGVDQLVDELQAQGVSADSIHGDKPQPSRLRALQRFKAGEVQVLVA
TDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVCADEVQLLAAIE
VLIRQTLQRREEPDFIPDHRVPMTDATGQVIKKPKKPKKPKEPLAGAGKPGKGAALGRWI
DSEKPKVKSVRKSPGFGKAKKG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcttccctcggcctgatcgaacccctgctgcgcgccaccgaggcgctcggc
taccagaccccatcgccggtgcaggccgaggcgattcccgccgtcctcaagggccgcgac
ctgatggccgcggcccagaccggcaccggcaagaccgccggcttcgccctgccgctgctg
cagaaactgacccaggaaggcccgcaggtggccagcaactcggtacgtgccctggtgctg
gtgcccacccgcgaactggccgagcaggtcaacgagagcttccgcgtctatggccagcac
ctgccactgcgcaactacgcggtctacggtggcgtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgacgtcctcgtcgccacccccggccggctgctcgacctctatcgg
cagaacgccgtgaagttcaaccagctccaggtgctggtgctggacgaggccgaccgcatg
ctcgacctcggtttcgcccgcgaactggacgagctcttcgccgcgctgccgaaacgccgc
cagaccctgctgttctccgccaccttctccgatgccatccgccagatggccggcgaactg
ctgcgcgacccgctgtccatcgaggtcagcccgcgcaacgccgccgcgaagagcgtgcgt
cagtggctgatccccgtggacaagaagcgcaagagcgaattgttcctgcacctgctggag
aaccgcggctggggccaggtgctggtcttcgccaagacccgcaagggggtcgaccaactg
gtggatgagctccaggcccagggcgtcagcgccgactcgatccacggcgacaagcctcaa
ccttcgcgcctgcgcgccctgcagcggttcaaggcgggtgaagtgcaggtactggtggcc
accgacgtggcagcccgtggcctggacatcgacgacctgcccctggtggtcaacttcgac
ttgcccatcgtcgccgaagactatgtgcaccgcatcggccgtaccggccgcgccggcgcc
accggcgaggcggtatcgctggtgtgtgccgacgaggtgcaactgctggctgccatcgag
gtattgatccgccagacccttcagcgtcgcgaagagccggacttcatccccgatcaccgg
gtgccgatgaccgatgccaccggccaggtgatcaagaagccgaagaaacccaagaagccc
aaggagcccctggccggcgctggcaagccaggcaagggcgcagcgctgggccgctggatc
gacagcgagaagcccaaggtcaaatcggtgcgcaagtcgccgggattcggcaaggcgaag
aagggctga
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