Metapseudomonas lalkuanensis: FXN65_04170
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Entry
FXN65_04170 CDS
T07120
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plal
Metapseudomonas lalkuanensis
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plal03016
]
FXN65_04170
Enzymes [BR:
plal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FXN65_04170
Transfer RNA biogenesis [BR:
plal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FXN65_04170
Prokaryotic type
tRNA splicing ligases
FXN65_04170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEY61283
UniProt:
A0A5J6QG10
LinkDB
All DBs
Position
complement(868211..869431)
Genome browser
AA seq
406 aa
AA seq
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MKPNSPQLLEVAGGKPIHLWTQGVPVEDEARQQLINTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAALTSLRAADLPDNLHGLRSAIERAVPHGKTFGRH
DQGAWDSVPDAADQAWRPLARRFKAITSKYPRLEKTNNRHHLGTLGTGNHFIEVCLDEAD
RVWFMLHSGSRGVGNAIGTLFIELAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAVGW
AQDFARQNRALMMQAVIDAARKVLKKPFEASLEAVNCHHNYVQKEWHFGREVLVTRKGAV
SAQKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRAMSRGRAKKLFTVEDQVRATA
HVECRKDKDVIDEIPMAYKDIDAVMAAQRDLVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgaacagcccgcaactgcttgaagtggccggcggcaagcccatccacctgtgg
acccagggcgtgccggtggaagacgaagcccgccagcagttgatcaacacggcgaagatg
cccttcatcttcaagcacctggcggtgatgcccgacgtgcacctgggcaagggctcgacc
atcggcagcgtgatcccgaccgtgggcgccatcattcccgccgccgtgggcgtggatatc
ggctgcggcatgatcgccgccctcacgtccctgcgcgccgccgaccttccggacaatctc
cacggcctgcgcagcgccatcgaacgggccgtgccccacggcaagacctttggcagacac
gaccagggcgcctgggacagcgtgccggatgccgccgaccaggcctggcggcccctggcc
aggcgcttcaaggccattacctcgaagtacccgcgcctggagaagaccaacaaccgccac
cacctcggcaccctgggtaccggcaaccacttcatcgaggtctgcctggacgaagccgac
cgcgtctggttcatgttgcacagcggttcgcgcggcgtgggcaacgccatcggcaccctg
ttcatcgaactggcccaggccgacatgcgccagcacatcgccaacctgccggaccgcgac
ctggcctacttcgaggaaggcagcaggcacttcgacgattacgtggaagccgtgggctgg
gcccaggacttcgcccggcagaaccgcgccctgatgatgcaggcggtgatcgatgcggct
cgcaaggtgctgaaaaagcccttcgaagccagcctggaagcagtgaactgccaccacaac
tacgtgcagaaggaatggcacttcggccgcgaagtgctggtgacgcgcaagggagcggtg
tcggcgcagaagggtgagttgggcatcattcccggttccatgggcgcgaagagcttcatc
gtccgcggactgggcaacgaagaagcgttctgctcctgcagccacggcgccggtcgcgcg
atgagtcgcgggcgggcgaagaagctgttcaccgtggaagaccaggtccgcgccaccgct
catgtggaatgccgaaaggacaaggacgtgatcgacgagatcccgatggcctacaaggac
atcgacgccgtgatggcggcccagcgcgacctggtggaagtggtgcacaccctgcgccag
gtggtctgcgtcaagggctga
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