Metapseudomonas lalkuanensis: FXN65_09880
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Entry
FXN65_09880 CDS
T07120
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plal
Metapseudomonas lalkuanensis
Pathway
plal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FXN65_09880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plal03400
]
FXN65_09880
Enzymes [BR:
plal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FXN65_09880
DNA repair and recombination proteins [BR:
plal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FXN65_09880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_30
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QEY65748
UniProt:
A0A5J6QSR3
LinkDB
All DBs
Position
complement(2102722..2106162)
Genome browser
AA seq
1146 aa
AA seq
DB search
MSVLRLPPLPTTAGKQHWGNLPGAALSLAIAEAASAGKGFTLLLTADSQTAERLEQELGF
FAPDLDVLHFPDWETLPYDLFSPHQDIISQRVDTLYRLPEVKRGVLVVPITTALHRLAPT
RFLLGSSLVLDVGQKLDVEQMRLRFEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDLPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLDKKAVTDFRGRFRERFDVDFR
RCPIYQDLASGITPAGIEYYLPLFFEESATLFDYLPADTQVFSLPGIEQAAEQFWTDVRN
RYEERRVDPERPLVPPAELFLPVEDCFARLKGSPRLILSQEDIEPGVGRERFSARALPDL
AIQAKATEPMSALRRFIEEFPGRVLFSAESAGRREVLLEMLARLKLRPQEVDGWPDFVSS
AERLAITIAPLDEGLLLDDPGLALIAESPLFGQRVMQRRRRERRSDAGDNVIKNLAELRE
GAPVVHIDHGVGRYLGLITLEIDGQAAEFLALQYAEEAKLYVPVASLHLIARYTGSDDAL
APLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPKADYATFSAGFPF
EETPDQQAAIEAVLADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGRQVAVLVPTT
LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAAQQLAEGKIDIIIGTHKLLQDDVR
FKNLGLVIIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATP
PARRLSVRTFVMERQKTAIKEALLRELLRGGQVYYLHNEVATIEKCAAELAELVPEARIA
VGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRVPALIPEDYLPD
VHARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPSKHLVRLTLLKLQAEKLGIRKVD
AGPQGGRIEFAADTCVDPLVLIKLIQGQPKRYKFEGATLFKFQVPMERPEERFNTLEALF
ERLTPQ
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgccttccgcctcttcccaccaccgccggcaagcaacattggggcaac
ctgcccggcgccgccctgagcctggccatcgccgaagccgccagcgccggcaagggtttc
accctgctgctgaccgccgacagccagaccgccgagcgcctcgagcaggaactgggtttc
ttcgccccggacctggacgtcctgcacttccccgactgggaaaccctgccctacgatctt
ttctcgccgcaccaggacatcatttcccagcgcgtcgacaccctttaccggctgcccgag
gtcaagcgcggcgtactggtggtgcccatcaccaccgccctgcaccgactggcgcccaca
cgcttcctgctgggttccagcctggtgctggacgtcggccagaagctcgatgtggagcag
atgcgactgcgcttcgaggctgccggctaccgttgcgtggacacggtctacgaacatggc
gagttcgccgtccgtggcgccctgatcgacctgttccccatgggcagcgacctgccctat
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgacccggaaacccag
cgctcggtggacaaggtggaatccatccgcctgctgccggcccgcgagttcccgctggac
aagaaggccgtcaccgatttccgcggacgcttccgcgagcgcttcgacgtcgacttccgc
cgctgccccatctaccaggacctggccagtggcatcacgccggcgggcatcgagtattac
ctgccgctgttcttcgaggagtcggcgaccctgttcgactacctgccggcggacacccag
gtgttctccctgcccggcatcgagcaggccgccgaacagttctggaccgacgtgcgcaac
cgctacgaggaacgccgcgtcgaccccgagcgtccgctggttccacctgccgaactgttc
ctgccggtggaagactgcttcgcccgcctcaagggctcgcctcgcctgatcctgagccag
gaagacatcgagcccggcgttggccgcgagcgcttctccgcccgcgccctgccggacctc
gccatccaggccaaggccaccgaaccgatgtcggcgctgcgtcgcttcatcgaggaattt
cccggccgcgtgctgttcagcgccgaatccgccggccgccgcgaagtgctgctggaaatg
ctcgcccgcctcaagctgcgcccgcaggaagtggacggctggccggacttcgtcagcagt
gccgagcgcctggccataaccatcgcgccgctggatgagggcctgttgctggacgacccg
ggcctggccctgatcgccgaaagcccactgttcggccaacgggtaatgcagcgtcgccgc
cgcgaacgccgtagcgacgccggcgacaacgtgatcaagaacctcgccgagctgcgcgaa
ggcgcgcccgtggtgcacatcgaccacggcgttggccgctacctgggcctgatcaccctg
gaaatcgacggccaggccgccgaattcctcgccctgcaatacgccgaggaagccaagctc
tacgtgccggtggccagcctgcacctgatcgcccgctacaccggcagcgacgatgccttg
gcccccttgcaccgcctgggctcggaagcctggcagaaggccaagcgcaaggccgccgag
caggtccgcgatgtcgctgccgagctgctggacatctacgcccgccgcgccgcccgcgaa
ggttacgccttcaaggacccgaaggccgactatgccaccttctccgccggcttccccttc
gaggaaacccccgaccagcaggccgccatcgaagccgtgctggccgatatgctcgcgccc
aggcccatggatcgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtcgcgatg
cgtgccgccttcgtcgcggtgcacagcggcaggcaggtcgccgtactggtgcccaccacc
ctcctcgcccagcagcactacaacagcttccgcgatcgcttcgccgactggccggtgacc
gtcgaagtgatgagccgcttcaagtcggccaaggaagtggaaggtgcggcgcaacaactg
gccgaaggcaagatcgacatcatcatcggcacccacaagctgctgcaggatgacgttcgc
ttcaagaacctcggtctggtgatcatcgacgaagaacaccgtttcggcgtgcgccagaag
gaacagctgaagtccctgcgcagcgaggtggacatcctcaccctcaccgccacgcccatt
ccgcgaacgctgaacatggcggtggccggcatgcgcgacctgtccatcatcgccacgccg
cccgcgcgccggctatcggtacgcaccttcgtcatggagcggcagaagaccgcgatcaag
gaagcgctgctccgcgagctgctgcgcggcggccaggtctattacctgcacaacgaggtg
gcgaccatcgagaaatgcgccgccgagctggccgaactggtgcccgaggcgcgcatcgcg
gtcggccacggccagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgcccagc
gccaacaccatcgtcatcgagcgtgccgacaagttcggcctggcccagctgcaccaactg
cgcggccgcgtcggccgcagccaccaccaggcctacgcctacctgctgacgccgccacgc
aagcagatgaccccggacgccgagaaacgcctggaagccatcgccaacgcccaggacctg
ggcgccggctttgtgctggccacccatgacctggaaatccgcggcgccggcgaactcctc
ggcgagggccagagcggccagatccaggccgttggtttcaccctctacatggagatgctc
gagcgtgcggtgaaagccatccgcaagggcgaacagccgaacctggaacagcccctgggc
ggcggcccggagatcaacctgcgggttccggcgctgatccccgaggactacctgccggat
gtccacgcgcgcctgatcctctacaagcgtatcgcctccgcggcggacgaagacggcctg
aaagagctgcaagtggagatgatcgaccgcttcggcctgctgcccgaacccagcaagcac
ctggtgcgcctgaccctcctcaagctgcaggcggagaagcttggcatcaggaaagtcgat
gccggcccgcaaggtggccgcatcgagttcgccgcagacacctgcgtcgacccgctggta
ctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgccaccctgttc
aagttccaggtgcccatggagcgcccggaagaacgcttcaacaccctcgaagccctgttc
gaacgcctgaccccgcagtag
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