Metapseudomonas lalkuanensis: FXN65_21610
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Entry
FXN65_21610 CDS
T07120
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plal
Metapseudomonas lalkuanensis
Brite
KEGG Orthology (KO) [BR:
plal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plal03009
]
FXN65_21610 (rlmD)
Enzymes [BR:
plal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FXN65_21610 (rlmD)
Ribosome biogenesis [BR:
plal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FXN65_21610 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Methyltransf_11
Cons_hypoth95
PCMT
RrnaAD
Methyltransf_23
TRM5-TYW2_MTfase
Methyltransf_15
Methyltr_RsmB-F
Methyltransf_12
Ubie_methyltran
UPF0020
DREV
Motif
Other DBs
NCBI-ProteinID:
QEY64532
UniProt:
A0A5J6QS26
LinkDB
All DBs
Position
complement(4676958..4678310)
Genome browser
AA seq
450 aa
AA seq
DB search
MSRRNTGLRFQPSGGARTPQVPVGKKQRLVIERLANDGRGIAFIEGRTWFVAGALPEEEV
EARVLAARSQVVEARAERVLSASPIRLVPPCAHAGQCGGCTLQHLPHDEQLALKQRTLAE
QLARVADVQPQEWVAPLVGADFGYRRRARIAVRWDVKARQLDVGFRAASSQAIVGIKDCQ
VLVQPLQPLMRALPGLLRGLDKPQAVGHVELFHGTASALLLRHTQPLGEADLQRLREFCA
AHQAQLWLHGEGEPHPDQPGARLGFRLEQWNLELEYRPGDFVQVNEAVNEAMVAQALDWM
NPQPGERVLDLFCGLGNFALPLARQVREVVAVEGVEAMVQRARGNAAANRLDNVHFFQAD
LSNPLADAPWARQGFDAVLLDPPRDGAFEAVRQIAATGAKRVVYVSCNPATLARDSAELV
KQGYQLKKAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcgtaatacaggcctgcgcttccagcccagcggtggagcgcggactccgcaa
gttcccgtgggcaagaagcagcggctggtcatcgagcgcctggccaacgacgggcgcggc
attgccttcatcgaaggacgcacctggttcgttgccggtgcgctgcccgaggaagaggtt
gaagctcgtgtccttgccgctcgcagccaggtggttgaggcccgtgccgagcgcgtgctg
agtgccagcccgatacgcctggtgccgccttgcgcccatgccggccagtgcggcggctgc
accctgcagcacctgccccatgacgagcagcttgccctgaaacagcgcaccctggccgaa
cagctggcgcgcgtcgccgacgttcagccgcaggaatgggtggccccactggtgggggct
gatttcggttatcggcggcgtgcccgcatcgctgtgcgctgggacgtcaaggcgcgtcag
ctggacgtcggctttcgcgcggcttccagccaggcgatagtcgggatcaaggattgccag
gtgctggtacagcccttgcagccattgatgcgcgcactgcccgggttgctcaggggcctg
gacaagccccaggcggtcggacatgtggagttgttccacggcaccgcttcggcgttgctg
ctgcgtcacacgcagccgctgggcgaggccgacctgcagcgcctgcgcgagttctgtgcg
gcgcaccaggcgcagctctggctgcatggcgaaggcgagccccatccggatcagccgggc
gcgcgcctcggctttcgcctggaacagtggaacctggagcttgaatatcgccccggcgac
ttcgtccaggtgaatgaggcggtcaacgaggcgatggtggcgcaggcgctagactggatg
aatccgcagccgggcgagcgtgtgctggatctgttctgtgggctcggcaacttcgccctg
ccgctggcgcgccaggtgcgcgaggtggtggcggtggaaggcgtcgaggccatggtgcaa
cgggcgcgcggcaatgccgccgccaatcgcctggataatgtgcacttcttccaggccgac
ctgtcgaaccccctggccgatgcgccctgggcccggcagggcttcgatgccgtcttgctc
gatccgccgcgtgatggcgcattcgaagccgttcggcagattgctgcaaccggtgcaaaa
cgagtggtctatgtatcctgcaacccggcgaccctggcgcgtgacagtgccgaactggtc
aagcagggataccagctgaagaaggccgggattctcgacatgtttcctcagacggcccat
gtcgaggccatggcgttattcgaggcgggctag
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