Candidatus Planktophila lacus: A1s21148_00815
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Entry
A1s21148_00815 CDS
T05050
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plan
Candidatus Planktophila lacus
Pathway
plan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1s21148_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plan03400
]
A1s21148_00815
Enzymes [BR:
plan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1s21148_00815
DNA repair and recombination proteins [BR:
plan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A1s21148_00815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
ASY10121
UniProt:
A0AAC9YPN1
LinkDB
All DBs
Position
169005..172490
Genome browser
AA seq
1161 aa
AA seq
DB search
MRALVQMLGADTAVASCIDGAQKIISPAPTYPFLLALRAQSKPLLVITSSSRGAEDLASE
LRELHQNVLEFPAWETLPHERLSPRSDTVARRLATLSTLARKDLESPIVVAPIRAVIHRF
IANLATSPLQTLEIGGEVDLTSLVEHLTQLAYTRTDLVEKRGEFAVRGGIVDLFLPLSEH
PIRIDFFGDEIEELSYFEVSSQRTTSPVVGKLSILPCRELLLTEEIRFRAEKAKDKYPAA
LEILDRMAQGIISEGMESLIPILINETETIFQRIPVGSEVVFIDDERIRMRTMDLLATNE
EFFEAAWSHAALGAVAPLPVTDATYLSWDALNEEVVRCGLKQRALNPFGTDLDTEATFLD
FSAIDPLRGDADRAVAAMQEAVSQGFSIIFSTAGQGMAERYAGIFRDADLPVFITPELKA
IPTKAAIHITQSSIAHGFSSLESRILFMTERDLTGSKASAKDGVRMPSKRKQAVDPLELR
AGDFVVHEQHGIGRYVEMVQRTINGVTREYLVIEYAPAKRGQPGDRIFVPTDTLDQVSKY
VGGEAPAVHRIGSGEWQKAKGRARKAVKQIAGELIRLYAARTSSPGYTFSADTPWQRELE
DAFSYIETPDQLSTIEEVKRDMEKPYPMDRIICGDVGYGKTEIAIRAAFKAVQDGKQVAV
LVPTTLLVQQHAKTFAERYSGFPIRVAGMSRFNTAKESKEILAELAAGSVDVVIGTHRLL
SQDVIFKDLGLVIVDEEQRFGVEQKESLKKMRTTVDVLAMSATPIPRTLEMAVTGIREMS
TITTPPEERHPILTYVGPSEDAQIRAAIHRELLRDGQIFYIHNRVESIDRAAAKIQELVP
EARIRIAHGQMSEGSLEDVILGFWNRDFDVLVCTTIVESGLDIANANTLIVERAENFGLS
QLHQLRGRVGRGRDRAYAYFLYPQDQPLTEVALDRLKTIATNTDLGAGMRVALKDLEIRG
AGNLLGGEQSGHIADVGFDLYMRMVGEAVNDYKTGIIDKEEESHECKVELPVNAHLAESY
VPGERLRLDLYRRLADVAKPEDVQSIREELLDRFGELPEEAVALLAVAQLRALAKSQGIR
EVVATGKFLRLSPISLPESRQLRLARLYPGSIYKGPTNTALVTLPKNPAWNPSNPTAEIV
DTSLLTWVTEVVNQLTKASTT
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcattagtgcagatgcttggggcagatactgccgttgcatcctgtatcgacggt
gcgcaaaagataatttccccggcccctacttatccatttttgcttgcactgcgcgcgcag
agtaaaccgttacttgtaatcactagctcaagtcgtggcgctgaggatttagcgagcgaa
ctccgagagttacatcagaacgttctcgaatttccggcctgggaaacactgcctcacgag
cgcttaagcccgcgcagtgacactgttgccagaaggctggcgacgctatcaacgcttgcg
agaaaagatttagagagcccaatagttgttgcaccgattcgcgcagttatacatagattc
atcgccaatttagcaacatcgcctctgcaaactttagaaataggcggcgaagtagattta
acttcgctagtagagcatttaacacagttggcatatacccgcaccgacttagttgaaaag
cgtggtgagtttgccgtgcgcggtggaatcgttgatctcttcttaccgctatcggaacat
ccgatacgcattgacttctttggcgatgagatcgaagagttaagttatttcgaggtttca
tcgcagagaaccaccagcccagttgttggaaagctttcaattctgccgtgccgcgaactt
ttgctaactgaagaaattcgttttcgcgcagagaaggcgaaggataagtacccggcagcg
ctagaaattctcgatcgcatggcgcaaggcatcatttccgaaggaatggaatcgctaatt
cccattctcatcaatgaaacggagacaatttttcaaagaattccagtaggcagtgaagtt
gtattcattgatgacgagcgaattcgtatgcgcaccatggatttacttgccacaaatgaa
gagttctttgaggcagcctggtcccacgccgcactcggcgctgttgcacccttacccgtt
actgatgcgacctatctttcatgggatgcactaaatgaagaagtagttcgttgcggttta
aagcaacgcgcccttaatccatttggcacggatttagataccgaagccaccttcttagat
ttcagcgccatcgatccgctacgaggagatgccgatcgcgcagttgccgcaatgcaggaa
gcggtaagccaagggttctcaattatcttctcaacggctggacaaggaatggctgaacgc
tatgccggcatcttccgcgatgccgatctacccgttttcattacgccagaactaaaagca
attccaactaaggctgccatacatataacgcaatcatctattgcacatggattctcttcc
cttgaatcgcgaattctatttatgaccgaacgtgatttaactggaagtaaggcttcagca
aaagacggtgtgcgcatgccgtcaaaacgtaaacaagctgttgatccgttagaactgcgc
gcaggtgactttgttgtccacgagcaacacggcatcggtcgttatgtcgagatggtgcag
cgcaccattaacggagtcactcgcgagtacttagttattgaatacgcacctgctaaacgc
ggccaacccggagatcgcatctttgttccaacagatactttggatcaagtttccaaatac
gtcggaggcgaagcacctgcagtgcaccgcataggtagtggcgaatggcagaaggcaaag
ggtcgcgcccgcaaggcggttaaacagattgctggcgagctaattcgtttatatgccgca
cgtacttcctcacctggttatacattctctgctgatacgccatggcagcgcgagctagaa
gatgccttctcttacattgaaactcctgatcaactttcgactatcgaagaagtaaagcgc
gatatggagaagccttacccaatggatcgcatcatctgcggcgatgttggttatggaaag
accgagatcgcaattcgcgcagcttttaaagcggtgcaagatggcaagcaggtcgcagtt
ctagttccgacaacgcttcttgtgcagcagcacgccaagacttttgcagaacgatattca
ggtttcccaattcgcgttgccggaatgtcacgctttaacaccgctaaagaatcgaaagag
atccttgccgaattagcggccggtagcgtcgatgttgtaatcggcacccatcgattgctt
tcacaagatgtgatcttcaaggatctggggctcgtcattgtcgatgaagagcaacgtttt
ggcgttgagcagaaagaatcgcttaagaagatgcgcacaacggtggatgttttagcgatg
tcggcaacgcctattccgcgcaccttggaaatggccgttactggtattcgcgagatgtcc
acgattacaacgccacctgaagagcgccatccgatccttacctacgttggaccaagtgaa
gatgcgcagattcgcgcagcgattcaccgcgaactattgcgcgacggtcagattttctat
attcataatcgcgttgaatctatcgatcgcgcggcggcaaagatccaagagttagttcca
gaagcacgtatccgcatcgcacatgggcagatgtccgaaggttcacttgaagatgtaatc
ctgggattctggaaccgtgacttcgatgttcttgtctgcaccacgattgttgaaagcggg
ctagatattgcaaatgccaatactttaattgtggagcgcgctgaaaacttcgggctttcg
cagttgcaccagttgcgtggtcgtgttggtcgcggacgcgatcgcgcttacgcctacttc
ttatatccgcaagatcaaccactgaccgaggttgcactagatcgcttgaaaacaatcgcc
acaaatactgacttaggcgcaggtatgcgcgttgcacttaaagatctagaaattcgcggc
gccggtaacttactgggcggcgagcaatcaggacacattgccgacgttggatttgattta
tacatgcgaatggtcggtgaagccgttaatgattacaagacaggcattattgataaagaa
gaagaaagccacgaatgtaaagttgaacttccagtaaatgcgcatctggccgaaagttat
gtacccggagagcgtttacgacttgatctctatcgtcgtttagcagatgttgctaaacct
gaagatgtgcaatcaattcgtgaagagttgctcgatagattcggcgaactccctgaagaa
gcggttgcgctgttggcagttgcacaattacgtgcgctagctaaatcacaaggaatccgc
gaagtagtagccactggaaaattcctacgactttcaccaatctccttgcccgaatcacgt
caattacgacttgcacgtttgtatccagggtctatctataagggcccaacgaatacagcg
ctggtcactttgccgaaaaaccctgcatggaacccgtctaatcccaccgctgaaatagtg
gatacttctctcctgacctgggtaactgaggtcgtcaaccagctaacgaaagcgagcacc
acgtga
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integrated database retrieval system
