Candidatus Planktophila lacus: A1s21148_01000
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Entry
A1s21148_01000 CDS
T05050
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plan
Candidatus Planktophila lacus
Pathway
plan03420
Nucleotide excision repair
plan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1s21148_01000
03430 Mismatch repair
A1s21148_01000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plan03400
]
A1s21148_01000
Enzymes [BR:
plan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1s21148_01000
DNA repair and recombination proteins [BR:
plan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1s21148_01000
MMR (mismatch excision repair)
Other MMR factors
A1s21148_01000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
PhoH
TetR_C_34
PTP-SAK
Motif
Other DBs
NCBI-ProteinID:
ASY10154
UniProt:
A0AAC9YR54
LinkDB
All DBs
Position
208574..211783
Genome browser
AA seq
1069 aa
AA seq
DB search
MIEKYSPQDIAAALQKVGAKVYKPTDEQSAIISIASNPLEPAVVIAGAGSGKTETMAARV
IYLVANGFARPDQILGLTFTRKASGELAIRIRTRLRQLRAAKLIPEDTPLEVAVTTYHSY
AARLLSEHSIRFGIDADIQPMGDAAMWQLANDIVRNWEDASYSNESAVGTVVEDLLGLTK
LMLEHQVSPEAIAAADNEVLEQLAQMSGATNPEVRKVAKVLSQRTALLPMVERFIQRRQE
SGQLSFDDQMSLAADISVKFSDIGELERAKYSVVLLDEYQDTSQSQVRMLSSLFGGGHPV
MAVGDPCQAIYTWRGASAGTINSFGKYFPKAAGHTGAERYSLLTTFRNDKTILELANVVS
EKIRRESGADVPPLTPRPGAGDGEIVCGVFENLDLEATAIAEYFTSLWFDKGRLAKPAEK
RSTFAVLVRKRSQIATIEGALRAADIPVEVLGLGGLIHVPEVADIVSMLRVIADPDSGAA
LMRHLVGPRINLGAKDLAALGAYSRNRTKGSRAESKSLIKKIAAGNPEQAEADDQFLGSL
IDTLDEIGGADKSTFTEIGYVRLVNFASDLRRLRSRAGGTITDLINEIESYLSLETEVML
RDGTGSGRRHIDRFLDEAGKFARSGGTLNSFLQWLDIAGKEEGGLKSAAPEVRSDVVQIL
TVHMSKGAEWDVVAVPGLAEGTFPGLNKNDPDNWITNERHIPFHLRGDHLELPRFSFNGA
TKNSDAGKEITKYADICKATKTREEIRLGYVAFTRARTHLIATTSWYRDGKDWVEPSTIF
EQVALVAQEHGKIISEVPRPDKDAKNPALENPLTGIWPRDPLGDTRSAFTAKVELVKNAA
PLDLATAQSVDIETSSWIEDARALIQERALGVNGVLEIPMPPRLSTSTLVALHKDPEELA
LTIRRPMPRPQDQYSRRGTAFHLWIEHHFNAATLFDDEDLDFLDPLEPDQTLESLKQTWL
ASEWGNRSPVAVEVPFEAVLGGVLIRGRIDAVYEINGRFEVIDWKTGATTLGESAAVQLA
VYRLAWAKLKGIDPALVSAAFHYVPISKTDRPADLLSEAQLIALITGAS
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagaagtactcaccgcaagatatcgcagccgcgctgcagaaagttggcgccaag
gtttacaaaccaactgatgaacaaagcgcaattatttctatcgcatctaatccgctcgaa
cctgccgttgttatcgcgggcgctggttcaggtaagactgaaacgatggcagcgcgcgtg
atttatttagttgccaatggttttgcgcgacctgatcaaatacttggtctgacatttact
cgtaaagcttccggggaactcgcgatccgtatccgcaccagactgcgccaacttcgcgcc
gccaagttaatcccagaggacacaccacttgaagttgccgttactacttatcactcttat
gccgcgcgtttactttccgagcactcaattcgctttggtatcgatgccgatatccaaccg
atgggcgatgctgcgatgtggcaactcgccaatgacattgtgcgtaattgggaagatgct
tcgtactcaaatgaatctgccgttggcacagttgtggaagatttacttggcctaaccaag
ttgatgctcgaacatcaggtttctcccgaagcaatcgctgcagcagataacgaagtcctt
gagcaattggcacagatgtctggtgcaacaaatccagaggtacgtaaagttgcaaaagtc
ttaagtcaacgtaccgctttacttccaatggtcgaacgctttatccaacgccgccaagaa
tccggtcaactctcattcgatgatcagatgtcacttgcggcagatatctcggttaagttt
tccgatatcggcgagctagaacgcgcaaagtattccgttgtattacttgatgaatatcaa
gacacttcgcaatcacaggtgcgaatgctgtcatcactctttggcgggggacatcccgtt
atggcagttggggatccatgccaggctatttacacatggcgcggagcctctgccggcact
attaattcattcggaaagtactttccaaaggccgccggccacactggtgctgaacgttat
tcactactcacaactttccgaaatgataagacaatccttgaacttgcaaacgttgtctcc
gaaaagattcgccgtgaaagcggcgcagatgttccaccacttactccgcgtccaggtgct
ggcgatggcgagatagtctgcggagtcttcgaaaatctagatctcgaagcaaccgcgatt
gcagaatacttcacctcactttggtttgataaaggacggctagcaaaacctgccgaaaag
cgttctacctttgcagttctagttcgtaaacgctctcaaattgcaactatcgaaggtgcg
ctacgcgccgctgatatcccagtcgaagttcttggacttggtggacttatccatgttcct
gaagtcgccgatattgtttcgatgctccgcgtaatcgcagatcctgattctggtgcagca
ctgatgcgccacttagtcggaccacgaattaacttgggtgcaaaagatttagcagcgctc
ggtgcttactcacgtaatcgcactaaaggctcacgcgccgaaagtaagtcattaatcaag
aagatcgccgccggcaatcccgaacaagccgaagccgatgatcagttcttaggttcactt
atcgatacccttgatgaaattggtggcgcagataaatcaacctttaccgagatcggttat
gtgcgcttagttaactttgcatctgacctgcgacgtctacgctctcgcgctggcggcacc
atcaccgatttaattaacgagatcgaaagttacttgagtctagaaactgaagtaatgctt
cgcgatggcacaggctctggtcgtcgccacatcgatcgcttcttagatgaagctggaaaa
ttcgcacgcagtggcggcactttaaattcattcctgcagtggctcgatatcgccggaaag
gaagaaggaggcctgaaatcagcggccccagaggtccgcagcgatgtcgtgcagatcctc
accgttcacatgtctaagggcgccgaatgggatgtggttgcagttccaggtcttgctgaa
ggaactttccctggtctaaataagaacgatccagataactggattacaaatgaacgacat
attccatttcatctgcgcggcgatcatctggaacttccacgcttctcatttaacggtgcc
actaaaaactctgatgccggcaaagagattacaaagtatgcagatatctgtaaggccaca
aagacccgtgaagaaattcgtttgggctacgtcgcatttacgcgtgctcgcacccacttg
attgcaacaacctcttggtatcgcgatggcaaggattgggtcgagccttctacgatcttt
gaacaagtcgctttagttgcacaagaacacggcaagatcatcagcgaggttccacgtcca
gataaagatgccaagaacccagcgctcgaaaatccgctgaccggtatctggccgcgcgac
ccacttggcgacactcgctctgcatttaccgccaaggtagaacttgttaagaacgcggcg
ccacttgatctagctactgcgcaatcagttgatatcgaaacctcatcatggattgaagat
gctcgtgcgctaattcaagagcgcgcacttggtgttaacggagttctcgaaattccaatg
ccaccacgactttctacttcgacgctcgttgcactgcataaagatcccgaagagctagcg
cttacgattcgccgcccaatgccgcgcccacaagatcaatactctcgtcgcggtactgca
ttccacttgtggatcgaacatcacttcaacgcagcaaccttgtttgatgatgaagatttg
gatttccttgacccacttgaaccagatcagactctcgaatctcttaagcaaacttggttg
gcatccgaatggggtaaccgctctccggttgcagtagaagttccatttgaggctgtttta
ggtggggttttgatccgcggtcgcatcgatgcggtctatgagattaacggtcgctttgaa
gttatcgactggaagaccggtgcaacaacgctcggtgaatcagcggcagtgcagctggcg
gtctatcgcttagcttgggcgaagttaaagggaattgatccagcgctagtttcagcagct
ttccattatgtgccgattagcaaaaccgatcgtccagcagatctcttgagcgaagcccag
ttgatcgcgctaattaccggtgctagttaa
DBGET
integrated database retrieval system
