Candidatus Planktophila lacus: A1s21148_03545
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Entry
A1s21148_03545 CDS
T05050
Name
(GenBank) ATP-dependent RNA helicase HelY
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
plan
Candidatus Planktophila lacus
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plan03019
]
A1s21148_03545
Enzymes [BR:
plan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A1s21148_03545
Messenger RNA biogenesis [BR:
plan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A1s21148_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
IstB_IS21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASY10610
UniProt:
A0AAD0E4L0
LinkDB
All DBs
Position
complement(711580..713988)
Genome browser
AA seq
802 aa
AA seq
DB search
MYGRCWTIVDPVSTPAEKFAAAKSRSKHAVTEDFLAESKFPFDDFQIQACHAVESGHGVL
VAAPTGAGKTVVGEFAASLALRNGKKCFYTTPIKALSNQKFQEFVDRFGEDRVGLLTGDT
NINSEADILVMTTEVLRNMLYAGSSTLTNLGSVVMDEVHYLADKFRGAVWEEVLIHLMES
VQVISLSATVSNAEEFGEWLGEVRGETHVILSEHRPIPLYQHILINSSLIDLFSSPGKVN
PEILAAEREAMRKVKIPRHRREQWGASESRLSRPEIIEKLQRENLLPAITFIFSRMGCDA
AVKQCLAAGIKLTNTEERAQILKTAERYTANLPEEDLEVLGYREWITALERGIAAHHAGL
LPSFKNAIEDLFQRGLVKAVFATETLALGINMPARTVVLDKLTKWNGEAHVPITPGEYTQ
LTGRAGRRGIDIEGNAVVQWSPTVDSAMAASLASTRTYPLRSSFTPTYNMAINLIARFGR
ERAHGSLESSFAQFQADRAVVGLVKQIKKNETARLELMASAECHLGDFESYARLRSEIKE
LEKLLSKRDGRKTFDNRQRQHMENEIDGLRRSTRSHPCHSCNDRETHARFAERAERLHRE
SEGLRGRVENRTHVIAKTFDRICDVLTHLGYIEGEKPLPQGKILAKIYAESDLLLTETIR
NGILDELSAPELLSVVSCMIFQSRSRDEYAPKMPHQNVTNALVEITKLWAKLEDIENEFD
VKTQKEPDFGFAYISYRWAQGNSLTNVLKGSDMSVGDFVRSAKQLMDLLMQIAGASEKLR
PVCREAIKRLDRGVVSYMVDDL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcaggtgctggactatcgtggaccccgtgagtacgcctgctgaaaaattcgcc
gctgcaaagagtcgaagtaagcacgctgtaactgaagattttctagccgaatcaaagttc
ccatttgatgatttccagatccaagcctgtcacgcggtcgaaagcggacatggcgtttta
gttgctgctccaacaggtgcaggaaagacggtcgttggagagttcgcggcatcccttgca
ctgcgtaacggcaagaagtgtttctacaccactccgattaaagcgctatcaaatcagaaa
tttcaagagtttgtagatcggttcggtgaagatcgcgttggtctcttaactggcgatacc
aatattaattccgaagcagatatcttggttatgaccacagaagttctgcggaacatgctc
tatgccggctcttcaacgctgaccaatttaggttcagttgttatggatgaggttcattat
ctggcggataagttccgtggtgctgtttgggaagaggttctgattcacctgatggaatct
gttcaggttatctcactatctgcaacggtttctaacgctgaagagttcggtgaatggctc
ggggaagtacgtggtgaaacccatgtgatcttgagcgagcatcgcccgattccgctctat
caacatattttaatcaactcatctctgatcgacttgttctcaagccctggcaaagttaac
cccgagatcttggctgccgaacgcgaggcgatgcgaaaggtaaagattccgcgtcatcga
cgcgagcaatggggagcatccgaatcgcgtttatcccgcccagagattattgaaaagcta
cagcgcgaaaacttgttacccgcaattacttttatcttctcgcgtatgggatgtgatgcg
gcagttaagcaatgtttggccgctggaattaagttaaccaataccgaagaacgcgcccag
attctcaaaactgccgagcgctacaccgctaacttgcctgaagaagatctagaggtgctt
gggtatcgcgaatggatcactgctctggagcgtggcatagccgcgcaccatgccggttta
cttccctcatttaaaaatgcgatcgaagatctctttcaacgcggacttgttaaggcagtc
tttgccaccgaaacccttgctctaggtatcaacatgccggcacgaactgtagtcctagat
aagttaactaagtggaatggtgaagcccacgttccgattacgccgggggagtacacccag
ttaactggacgtgcaggtagacgcggtatcgatattgagggaaatgctgttgtgcaatgg
tcaccaacggtggattcagcgatggcggcgagcttggcatctacaagaacttatccgctt
cgttcttcatttactccaacctacaacatggcgataaatctaatcgcacgatttggtcga
gagcgagcccacggaagtttggaatcttcgtttgcgcagttccaagccgatcgcgctgta
gttggcttggtaaagcaaattaagaagaatgaaactgcgcgacttgagttaatggctagc
gccgaatgccacttaggtgacttcgaaagttatgccagattgcgaagtgagattaaagag
ttagagaagctgctctccaaacgtgatggccgtaaaacttttgataatcgccagcgtcag
catatggagaatgagattgacggcctgcgccgcagcacgcgatcacatccctgccattca
tgtaacgatcgcgaaacccacgcccgctttgctgagcgcgctgaacgcttgcaccgtgaa
tccgaaggcttacgtggaagagtcgagaaccgtacccacgttatcgcaaaaacttttgac
cgcatttgtgatgtattgacccatctcggatatatcgagggggagaagccacttccgcaa
ggcaagatcctcgccaagatttacgcagaatcagatcttcttttaaccgaaactattcgt
aatggaattctcgatgagttatctgctccggaacttttatccgttgtctcatgcatgatc
tttcaatcaagatctcgcgatgaatacgcaccaaaaatgccacatcaaaacgtcactaac
gcacttgttgagatcaccaaactttgggccaaacttgaagatatcgagaacgagtttgat
gtaaaaactcagaaggaacccgatttcggttttgcctatatctcttatcgttgggcacag
ggcaattcgttaaccaacgttctaaagggttcggatatgtcggtcggagattttgttcgt
tcagctaagcagttgatggatctactgatgcagatcgccggtgccagcgagaagttacgt
ccagtttgtcgagaggcgatcaagcgtttagatcgcggcgtagtttcatatatggtggat
gacctatga
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