Candidatus Planktophila lacus: A1s21148_05200
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Entry
A1s21148_05200 CDS
T05050
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
plan
Candidatus Planktophila lacus
Pathway
plan03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A1s21148_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plan03400
]
A1s21148_05200
Enzymes [BR:
plan01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A1s21148_05200
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A1s21148_05200
DNA repair and recombination proteins [BR:
plan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A1s21148_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Ribosomal_S13
Zn_Tnp_IS91
Zn_ribbon_TFIIB
DZR
Motif
Other DBs
NCBI-ProteinID:
ASY10892
UniProt:
A0AAD0DZM0
LinkDB
All DBs
Position
complement(1043255..1044094)
Genome browser
AA seq
279 aa
AA seq
DB search
MPELPEVETVRRGLVSLVKGYKIVGAHDLHPRALKPESIAPLKSIQGAKIIDLNRRGKFL
WFVLDRPQVLVAHLGMSGQFLIHQQGHPRAKHVRAQFDLTKQMRKRELVFNDQRTFGWVS
VEETIDGVPSSAQHIARDPFDSQFDLQETIEKFAKRKIRIKTALLNQEIMSGVGNIYADE
TLWRAKVHPEVSTADLSKKKLASIISYATEVMSEAIEQGGTSFDDLYINVNGESGFFEQA
LAAYGCTDEPCPRCGTPIRRITFGARSSHFCPRCQKKYR
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaacttccagaggttgaaacggttcgccgcggcttagtcagcctggttaaaggt
tacaaaattgttggggcgcatgatttacatccacgcgcgcttaaacctgaatcaatcgca
ccgctaaaatcaattcagggcgccaagattattgacttaaatagacgtggcaagtttctc
tggtttgttttggatcgcccacaagtattagttgcacatctgggtatgagtgggcagttc
ttaattcatcagcaaggccatcccagagcaaagcatgttcgcgcacagtttgacctaacc
aagcagatgcgcaagcgcgagttagtttttaatgatcagcgaaccttcggctgggtatca
gttgaggaaacaattgatggcgtgccaagttcagcccagcacattgcgcgcgatcccttt
gattcgcaatttgatctgcaagagacgattgagaagtttgcaaagcgaaagatccgaatt
aagaccgcgctactaaaccaagaaatcatgagcggtgttggaaatatctatgccgatgaa
actctttggcgcgccaaggttcatccagaagtatctacagccgatctttccaagaagaag
cttgcttcgataattagttatgcaacagaggttatgagtgaagcaatcgaacaaggtggc
acatcatttgatgatctctatataaatgtaaatggcgaaagtggattcttcgaacaagcc
cttgcggcttatgggtgtaccgatgagccatgcccgcgttgtggaacacctattcgtcgg
atcacatttggtgcgagatcatcgcatttttgcccgcgctgccagaagaaatacaggtag
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