Candidatus Planktophila lacus: A1s21148_06135
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Entry
A1s21148_06135 CDS
T05050
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plan
Candidatus Planktophila lacus
Pathway
plan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1s21148_06135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plan03021
]
A1s21148_06135
03400 DNA repair and recombination proteins [BR:
plan03400
]
A1s21148_06135
Enzymes [BR:
plan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1s21148_06135
Transcription machinery [BR:
plan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1s21148_06135
DNA repair and recombination proteins [BR:
plan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1s21148_06135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ASY11063
UniProt:
A0AAC9YRN8
LinkDB
All DBs
Position
complement(1214258..1218070)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLDVNFFDELRIGLASAQNIRDWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDAEGREEDMPQLEKKLANDRKKIETRRDNDLDARQKKLESD
LAELEAEDAKSDVKRKVRESAERELKALRDRAEREITRLEDVWARFKNLKVQDLEGDENL
YREMRDRYGIYFKGDMGAAAIKKRLETFDLEAEYAILTDLSENGKGAKKTRAIKRLKVVN
AFMTTSNHPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITSPTQDMVLGLYYLTMEREGELGEGR
AFGSVAEAIMAHDQHSVSLQAKIKIRLTKTGETIETTIGRALFNEALPADYPYVDLDVTK
KQLGAIVDKLAEFYPKVTVAQTLDALKSLGFHWATRAGATIGIEDVVTPPRKKEILESYE
TQADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKEMEENFPRVNPVWMMVYSGARGN
MMQIRQIAGMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTHGARKGLADTALRTADS
GYLTRRLCDVAQDVIIREEDCGTDRGLVLPIATRQQAGNLVKHDHVETSVYGRTLADDIE
VNGTVLAKAGSDLGDRVIDELVSAGVDEVKIRSVLTCDSKVGQCAACYGRSLAAGQLVAV
GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAETA
GVVSFREDAKGKKIVVTPDDGGEEVAYPITRRQKLLVEEGSRVEVGQKMVVGAIDPKQVL
RILGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDADLLPGELVE
RGRFETENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKS
DPLLGLKENVIIGKLIPAGTGLARYRNIRVEPTEAAKAAVYAAYDEYDFTPFDQGGSGEA
VRLDEVEIPR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgtcaacttctttgatgaattaagaatcggtctcgcatcggctcagaacatt
cgtgattggtcatttggcgaagtaaagaagccagagacaatcaactaccgcacactcaag
ccagagaaggacggactcttcgacgagaagattttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgttcgatttaagggaatcatctgcgagcgttgcggtgtt
gaagtaacacgtgccaaggttcgtcgcgaacgtatgggacacatcgagcttgccgctcct
gtaacccacatctggtacttcaagggcgtgccttcacgtcttggatacctacttgatctt
gctccaaaggatcttgaaaaggttatttactttgctgcatacatgatcacagaagttgat
gcagaaggccgcgaagaagatatgccacagctcgagaagaagctggctaacgatcgtaag
aagatcgaaacacgtcgcgacaatgatctcgatgctcgccagaagaagctcgaatctgat
cttgctgaactcgaagcagaagatgcaaagtcagatgtaaagcgcaaggttcgcgaatct
gcagagcgtgagctcaaggcacttcgtgatcgcgctgaacgcgaaataactcgcttggaa
gatgtttgggctcgctttaagaacctcaaggttcaagatctagaaggcgacgagaacctc
taccgcgaaatgcgcgatcgttacggaatctacttcaagggtgacatgggagctgctgca
attaagaagcgcctagaaacttttgatctcgaagctgaatacgcgatcctcaccgacctt
tctgaaaatggaaagggcgcaaagaagactcgcgctatcaagcgtcttaaggtcgtaaat
gcatttatgacaacaagcaatcacccagcatcaatggtgctcgattgcgttccggttatc
ccgccagatctacgcccaatggtgcagctcgacggtggacgctttgcgacttcagatcta
aacgatctctatcgccgcgttatcaaccgcaacaaccgtttgaagcgtcttgctgatctc
ggtgctcctgaaattatcgtcaacaacgaaaagcgtatgttgcaagaagcagttgatgct
ttgttcgacaacggtcgtcgtggtcgtccagtaactggtcccggcaaccgtgcgcttaag
tcactatctgacatgctcaagggtaagcaaggtcgtttccgtcagaacttgctcggaaag
cgcgttgattactcaggtcgttcagtaatcgttgttggtccacagttgaagttgcaccag
tgcggtctgccaaagcagatggcgctagaactcttcaaaccattcgtaatgaagcgtcta
gtagatctcaaccacgcgcagaatattaaatctgcaaagcgtatggttgagcgcgcacgt
ccagttgtttgggatgttcttgaagaagtaattgcagaacaccctgtgctcctaaaccgt
gctcctactcttcaccgtctaggtatccaagctttcgaaccacaactggttgaaggtaaa
gcaattcagatccacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgtgcacttgccactatctgctgaagcgcaagcagaagctcgtatcttgatgttg
tcttcaaacaacatcttgtctcctgctaacggtcgaccaattacatctcctacacaggac
atggttcttggtttgtactacctcaccatggaacgcgaaggcgaactcggcgaaggccgc
gcattcggttctgttgctgaagcgatcatggctcatgatcagcattcagtttcattgcag
gcaaagattaagatccgcctcacaaagactggcgaaacaattgaaacaacaattggtcgc
gcactctttaatgaagcactgcctgctgattacccatacgtcgatcttgatgtcactaag
aagcaacttggtgcaatcgtcgataagttggctgagttctatccaaaggtcacagttgct
caaactcttgatgcgctgaagtcacttggattccattgggcaactcgcgccggtgcaaca
atcggtatcgaagatgttgttacacctcctcgtaagaaagagatcctcgaaagctacgaa
acacaggctgacaaggttcaatcacaatacgaaaagggtctcatcacagatgacgagcgt
cgccaagagctcatcgaaatttggaccaaggcaaccgctgaagttggtaaagagatggaa
gaaaacttccctcgcgtcaacccagtttggatgatggtctactcaggtgctcgcggaaat
atgatgcagatccgtcagatcgcaggtatgcgtggacttgtagctaacccaaagggtgaa
attattcctcgcccaattaaggctaacttccgtgaaggtctctcagtactcgagtacttc
atttcaacgcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactct
ggttacttgactcgtcgtctctgcgacgttgcacaagatgtaatcattcgcgaagaagat
tgcggaaccgatcgtggtctcgtacttccaatcgcaacacgtcagcaagctggcaacctt
gtaaagcacgatcacgttgaaacatctgtctacggtcgcaccttggctgatgacattgaa
gttaacggaaccgttctcgctaaggctggctcagatcttggtgaccgcgtcatcgacgaa
ctagtttctgctggtgtcgacgaagttaagatccgctcagttctaacttgcgatagcaag
gtcggacagtgcgcagcttgctacggtcgctcacttgctgcaggtcaacttgttgcagtc
ggcgaagcagtcggaattatcgctgcacagtcaatcggtgagcctggtacacagctaaca
atgcgtaccttccacactggtggcgttgcaggtgatgacatcactcacggtcttccacgt
atcgtcgagctcttcgaagcacgtacacctaagggtgttgcgccaatcgcagagaccgcc
ggcgttgtttcattccgtgaagatgcaaagggtaagaagatcgtcgtaacaccagatgat
ggtggcgaagaagttgcttacccaatcacacgtcgccagaagctacttgtagaagaaggt
tcacgcgttgaagttggccagaagatggtcgtcggcgcaattgatccaaagcaggtactt
cgtattctcggaccacgtgcaacacaagttcacttggttaacgaaatccaatctgtttat
cgctcacagggcgtaggcattcacgataagcacatcgaagtaatcgttcgccaaatgctt
aagcgcattacagtgcttgaagcaggagatgcggatctacttcctggcgaactcgtagaa
cgcggtcgctttgaaaccgaaaaccgtcgcgtagtcacaacaggtggcaaggcagcctct
ggtcgcccagaacttatgggtatcaccaaggcatcacttgcaactgagtcatggctatca
gcggcttcattccaggaaacaactcgcgtacttacagatgctgcgttgtcagagaagagc
gatccattgcttggtctgaaagaaaacgtcatcattggtaagttgattccagctggtacc
ggccttgctcgttaccgcaatatccgcgttgaaccaacggaggcagcaaaggctgcggtc
tacgctgcatacgatgagtacgacttcacaccattcgatcagggtggttcaggcgaagca
gttcgcttggatgaagtcgagattcctcgctag
DBGET
integrated database retrieval system
