Plantibacter sp. PA-3-X8: EAO79_09170
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Entry
EAO79_09170 CDS
T05731
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAO79_09170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plap03021
]
EAO79_09170
03400 DNA repair and recombination proteins [BR:
plap03400
]
EAO79_09170
Enzymes [BR:
plap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAO79_09170
Transcription machinery [BR:
plap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAO79_09170
DNA repair and recombination proteins [BR:
plap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAO79_09170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF1690
Motif
Other DBs
NCBI-ProteinID:
AZH83049
LinkDB
All DBs
Position
1925035..1928916
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEDARHQDMPGLENELRLEIKTLGDQRDSRIADRLKKLEDD
LVALEEEGAKSEQKRRTKDAAEKEMSQTRKSYDEQIAHLERVWEDFRNLKVGDLKPEDSV
FHELQDRFGLYFEAYMGAEAVKKRLLSFDLAAESELLHHQIAEGKGQKKIRAIKRLRVVN
SFLITGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVEGEGR
AFSSVAEAILAKDQGSLDLNAKVRIRLTDVTFAEGTGPEGYEGWGVALVETTLGRALFNE
ALPADYPYVEDVADKGKLSSIVNDLAERYPKTVVAATLDNIKDAGFHWATRSGVTVALSD
VLTPPNKREIVQGYEKQAAKVQSQFDKGLTTDAERRQELIKIWTEATEKVAEAMRANFPA
DNTINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELAIANADSSGELVRDPN
VENSVFARSLAAAAVNPKGEVVAEAGEDVGDVLIDKLVSAGVENIKVRSVLTCESTVGVC
AACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQE
LFEARTPKGATPIAEAAGRITIDENDKARKVILTPDNGDEPVVYPVLKRAVLLVEDGQHV
ELGQKIHVGAVDPKEVLRVQGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKV
TVVDHGDTDLLPGELVDRLRYAELNRSAVSEGRRTASARQEVMGITKASLATESWLSAAS
FQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLARYRNVTVEATEEAKAERYPN
RIFGEDGAFNESDLSFVDFDSFSSDDFTPGNYN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcacaacttttgacgagcttcgcattggtctggccaccgcagacgacatc
cgtgcctggtcgcacggagaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggtctgttcggtgagcagatcttcggtccttcccgcgactgggagtgc
gcctgcggcaagtacaagcgggtccgcttcaagggcatcgtgtgcgagcgctgcggtgtc
gaggtcacgaagtcgtcggtgcgccgtgagcgcatgggccacatcgaactcgccgccccg
gtcacgcacatctggtacttcaagggtgtcccctcgcgcctcggctacctgctggacatg
gcgcccaaggacctcgagaaggtcatctacttcgcggcctacatggtcatcgatgtggac
gaggacgcacgtcaccaggacatgcccggccttgagaacgagctccgtctcgagatcaag
acgctcggcgaccagcgcgactcgcgcatcgcagaccgcctgaagaagctcgaggacgac
ctcgtcgccctcgaggaggaaggcgccaagagcgagcagaagcgtcgcaccaaggacgcc
gctgagaaggagatgagccagacccgcaagtcctacgacgagcagatcgctcacctcgag
cgcgtctgggaggacttccgcaacctcaaggtcggcgacctcaagcccgaggactccgtg
ttccacgagctgcaggaccgcttcggcctgtacttcgaggcctacatgggtgccgaggcg
gtcaagaagcgcctgctgtccttcgacctcgcggccgagtccgagctgctccaccaccag
atcgcggagggcaagggtcagaagaagatccgcgccatcaagcgtctgcgcgtggttaac
tcgttcctcatcaccggcaactcgccggccgcgatggtcctcgacgtggtcccggtcatc
ccgccggagctccgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgctcgacctc
ggggctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggtcgtcgtggtcgccccgtcaccggtaccggcaaccgtgccctgaag
tccctcagcgacatgctgaaggggaagcagggtcgattccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgtggtctgcccaagcagatggcgctggagctcttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgcgaagcgcatggtcgagcgcagccgt
cccgaggtctgggacgtgctggaggagatcatccgcgagcgtcccgtgctgctgaaccgt
gcgccaacgctgcaccgtctcggcatccaggcgttcgagcctcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgtgccgcgttcaacgcggacttcgacggtgaccag
atggctgtccacctcccgctctccgtcgaggcccaggccgaggcgcgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtccgacggccgcccggtcaccctgcccacgcaggac
atgatcatcggcctccaccacctgaccaccctcaaggagggtgtcgagggtgagggccgt
gccttctcgtccgtcgccgaggccatcctcgcgaaggaccagggctcgctcgacctcaac
gccaaggtgcgcatccgtctgaccgacgtgacgttcgccgagggcacgggtcccgagggc
tacgagggctggggtgtcgcactcgtcgagacgaccctcggtcgcgcactcttcaacgag
gcgctgccggcggactacccctacgtggaagacgtggcggacaagggcaagctgtcctcg
atcgtcaacgacctcgcggagcggtacccgaagacggtcgtcgccgccacgctcgacaac
atcaaggacgccggttttcactgggcgacgcgttccggtgtgaccgttgcgctcagcgac
gtcctgaccccgccgaacaagcgcgagatcgtgcagggctacgagaagcaggccgccaag
gtccagagccagttcgacaagggtctgaccacggatgccgagcgtcgtcaggagctcatc
aagatctggacggaggccaccgagaaggtcgccgaggccatgcgcgcgaacttcccggcg
gacaacaccatcaaccgcatggtgtcgtcgggtgctcgtggtaactggctgcagatccgc
aacatcgcgggtatgcgaggcctggtgaacaacccgaagggtgagatcatccctcgcccg
atcatctcctcctaccgtgagggcctgtcggtcgcggagtacttcatcgcgacccacggt
gctcgtaagggtctggccgacacggcgctccgtaccgccgactcgggatacctcacgcgt
cgtctcgtcgacgtctcgcaggatgtcatcatccgcgaagacgactgcggcacgaccaag
ggtctcgagctcgcgatcgcgaacgccgacagctcgggtgagctcgtgcgcgacccgaac
gtggagaactccgtgttcgcccgttcgctggccgctgccgcggtcaacccgaagggtgag
gtcgtcgccgaggccggcgaggacgtcggtgacgtgctcatcgacaagctcgtctccgcg
ggtgtcgagaacatcaaggtgcgctcggtcctgacctgcgagtcgaccgtcggtgtgtgt
gcagcctgctacggccgctcgctcgccacgggcaagctcgtcgacatcggcgaggccgtc
ggcatcatcgcggcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttc
cacacgggtggttcggcatcggcggacgacatcacgcagggtctgccccgcgtgcaggag
ctgttcgaggctcgtacccccaagggtgcgaccccgatcgccgaggccgccggtcgcatc
acgatcgacgagaacgacaaggctcgtaaggtcatcctgacgcccgacaacggcgacgag
ccggtcgtctacccggtgctgaagcgtgcggtcctcctcgtcgaggacggacagcacgtc
gagctcggtcagaagatccacgtcggtgcggtcgaccccaaggaggtcctgcgcgtgcag
ggcgtccgcgaggtccagaagcacctcgtcggtggcgtccagggcgtgtaccgctcgcag
ggtgtcccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtg
accgtcgtcgaccacggcgacaccgacctgctgcccggtgagctcgtcgaccgcctgcgc
tacgccgagctcaaccgctcggccgtgtcggagggtcgtcgcaccgcatcggctcgccag
gaggtcatgggtatcaccaaggcgtccctcgcgaccgagtcgtggctgtcggccgcttcc
ttccaggagaccacgcgtgtcctcacgcaggccgccatggaaggcaagagcgacccgctg
gtcggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcctggcg
cgctaccgcaacgtgacggtcgaggcgaccgaggaggcgaaggcggagcgttacccgaac
cgcatcttcggtgaggacggcgcgttcaacgagtccgacctgagcttcgtcgacttcgac
agcttcagctccgacgacttcacccccggtaactacaactag
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