Plantibacter sp. PA-3-X8: EAO79_10420
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Entry
EAO79_10420 CDS
T05731
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plap
Plantibacter sp. PA-3-X8
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plap03019
]
EAO79_10420 (hrpA)
Enzymes [BR:
plap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EAO79_10420 (hrpA)
Messenger RNA biogenesis [BR:
plap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EAO79_10420 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
ResIII
AAA_30
nSTAND3
AAA_16
NACHT
AAA_23
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AZH83268
LinkDB
All DBs
Position
complement(2182005..2185880)
Genome browser
AA seq
1291 aa
AA seq
DB search
MSDLRISYPPELPVSAARADIARAISENQVVIVAGATGSGKTTQLPKICLELGRESIGHT
QPRRLAARTIAERISEELGQELGGIVGYQVRFTDQASKATKIKLMTDGILLNEIHRDRML
RKYDTIIIDEAHERSLNIDFLLGYLKQLLPQRPDLKVIITSATIDPESFSKHFDGAPIVE
VSGRTYPVEIRYRPLVADEPTDDDEDAPESEAADRDYLEGINAALDELARESMGDVLVFL
SGETEIRDAADAIRGRNLPGTEVLPLYGRLSSADQHRVFQPSTVAGLRRRIILATNVAET
SLTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSGRSGRTSDGIAIRLYS
EDDFAKRPEFTEPEILRTNLAAVILQMISLGLGDIAAFPFLQPPDARGIKDGVDLLSELG
AIETRTFADGSPRGGGPRLTRVGRDLSRLPIDPRFARMVVESKQHGVSREVLAIVAALTI
QDPRERPLEHRQKADELHRRFVDPTSDFLALLNLWNYLEEKQDELSSSAFRRLCKNEFLN
YLRVREWHDVYRQLRQLAKPLGLTINEPAVNPDGIHKSLLAGLLSHIGLKDQTVAPVVKG
RNAPPATKTAKKGDYIGARQTRFVLFPGSALAKKQPNAVMSAELVETSRLFARTNASIDP
AWAEQIAGDLCKRSYSEPHWEKNQGSAVAFEKVTLFGVPIVPRRRVQFGRIDQEQARELF
LRHALVDGEWTHDIGRDKLFDFHRANRRLRKELSELEERTRRRDILFDDEAVFDFYDARV
PSEVSTTRGFESWWRKTRVDQPELLTMRQEDLLPEDAPAVDEDRFPAEWVQADQRLKLSY
RFEPGSDDDGVTVIVPLALLDRLSPAGFDWQVPGLRRDLITAMIKALPKALRRNIVPAAD
WAAKLLAELPADVPAVAPGSPAAEDSFATRLANAIKRLSYMDISASDFEMERVPEHLLVT
FRVIDERGRTLASGKDLVELQQRLKQRTRASVAKVAAARVPNAIERSGFTRWDFDDLPRF
IDIRQEDGVIRGYPAIVDDGTSVSIRIMSTEADQARAMPAGVRRLLLLAIPSPTAYVQQH
LKANEKLALATSPYRSTPALFEDCLAACIDDVLFRVVPDGQVFSRLQYETLRDRVSASVM
DRMFQTVAIVARILQAARDTEKAMKAATSMTLLAALTDMRGQLDGLVFPGFVSRTGSARL
EHLPRYLAGIRYRAERLTDNPNRDRVWMTEAQTASARFEAAGGTIPLPAEAPEHLVKARW
MLEELRISLFAQQLGTAESVSLQRLQKVLAS
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctccgaatctcctacccgcccgagctgccggtcagtgccgcccgcgcggac
atcgcgcgtgccatcagcgagaaccaggtcgtcatcgtcgccggggcgacgggttccggc
aagaccacgcagctgccgaagatctgcctcgagctcggtcgcgagtccatcgggcacacg
cagccccgacgactggccgcgcgcacgatcgccgaacgcatttcggaggagctcggccag
gagctcggtggcatcgtcggctaccaggtccgcttcaccgatcaggcgtcgaaggcgacg
aagatcaaactgatgaccgacggcatcctgctgaacgagatccaccgcgaccggatgctg
cgcaagtacgacacgatcatcatcgacgaggcacacgagcgcagcctcaacatcgacttc
ctgctcggctacctcaagcagctcctcccccagcgccccgacctcaaggtcatcatcacg
tccgcgacgatcgacccggagagcttctcgaagcacttcgacggagcacccatcgtcgag
gtctccggccgcacgtacccggtcgagatccgctaccggccgctcgtggccgacgagccc
accgacgacgacgaggacgccccggagtccgaagccgccgaccgcgactacctcgaaggc
atcaacgccgccctcgacgagctggcgcgcgagtcgatgggcgacgtcctcgtcttcctg
tccggcgagacggagatccgcgacgccgccgacgccatccgcgggcgcaacctgcccggc
accgaggtgctgccactctacggccggctctcctccgccgaccagcaccgcgtgttccag
ccatcgaccgtggcaggtctccgacggcgcatcatcctcgcgacgaacgtggccgagacg
agcctcacggtgcccggcatcaagtacgtcatcgacgccggaaccgcccgcatctcgcgc
tacagcgtgcgctccaaggtgcagcggctccccatcgaggcgatctcgcaggcttcggcg
aaccagcgttcgggtcggtccggccgtacgagcgacggtatcgccatccgcctctactcg
gaggacgacttcgcgaagcgcccggagttcaccgaaccggagatcctccgcacgaacctc
gccgcggtgatcctccagatgatctccctcggcctcggcgacatcgccgccttccccttc
ctccagccaccggacgcccggggcatcaaggacggcgtcgatctgctgtccgaactcggc
gcgatcgagacgcgcaccttcgccgacggctcacctcgcggcggcggtccacgcctcacg
cgggtggggcgcgacctcagccgcctgccgatcgatccgcggttcgcgcgcatggtcgtg
gagtcgaagcagcacggggtgtcgcgggaggtgctcgcgatcgtcgcggcgctcaccatc
caggacccacgcgaacgaccgctcgagcaccgacagaaggccgacgaactgcaccgccgg
ttcgtcgaccccacgagcgacttcctcgccctcctgaacctctggaactacctcgaggag
aaacaggacgagctgtcgtcgagcgcgttccgtcggctctgcaagaacgagttcctcaac
tacctccgcgtccgcgagtggcacgacgtctaccgccagctgcgtcaactcgcgaagcct
ctcggcctgacgatcaacgagccggcggtgaaccccgacggcatccacaagtcgctcctc
gcggggctcctctcgcacatcgggctgaaggaccagaccgtcgctccggtcgtgaagggc
cggaacgctccaccggcgacgaagaccgcgaagaagggcgactacatcggcgcccgccag
acgcgcttcgtcctcttccccgggtccgcgctcgcgaagaagcagccgaacgccgtcatg
agcgcggaactcgtggagacgagccggctgttcgcccgcaccaacgcctcgatcgacccg
gcgtgggcggaacagatcgccggcgacctctgcaagcgctcgtacagcgagccgcactgg
gagaagaaccagggctccgccgtcgccttcgagaaggtgaccctcttcggcgtgccgatc
gtgccgcgccgccgggtgcagttcggtcgcatcgaccaggagcaggcccgcgaactgttc
ctgcggcacgcgctcgtcgacggcgagtggacccacgacatcggtcgcgacaaactgttc
gacttccaccgcgcgaaccgacggctgcgcaaggagctgagtgagctcgaggagcggacg
cgacgccgcgacatcctcttcgacgacgaagccgtcttcgacttctacgacgcccgcgtc
ccttccgaggtctcgacgacgcggggcttcgagtcctggtggcgcaagacgcgcgtcgac
cagcccgagctgctcacgatgcgccaggaggacctcctccccgaggacgctccggcggtg
gacgaggaccgcttccccgccgagtgggtgcaggccgaccagcggttgaagctcagctac
cgtttcgagcccggaagcgacgacgacggcgtgacggtcatcgtcccgctcgccctgctc
gaccgactctcgcccgcgggtttcgactggcaggtccccggtctccgtcgggacctcatc
acggcgatgatcaaagcgctcccgaaagccctgcgtcggaacatcgtgcctgcggccgac
tgggcggcgaagctgctcgccgagctccccgccgacgtcccggcggtcgcccccggcagt
cccgccgccgaggactccttcgccacccgtctcgcgaacgcgatcaagcggctctcctac
atggacatctcagcctcggacttcgagatggaacgcgtccccgagcacctgctcgtgacc
ttccgggtcatcgatgagcgcggccggacgctcgccagcggcaaggacctcgtcgagctg
cagcagcgcctcaagcagcgcacccgggcgagcgtcgccaaggtcgcggccgccagagtg
cccaacgccatcgagcgctccgggttcaccaggtgggacttcgacgacctcccccgtttc
atcgacattcgccaggaggacggcgtgatccgcggctaccccgcgatcgtcgacgacggt
acgagcgtgtcgatccggatcatgagcacggaggccgaccaggcccgcgccatgcccgcg
ggggtgcgccgcctcctcctgctcgcgatcccgtccccgacggcctatgtgcagcagcac
ctcaaagccaacgagaagctcgcgctcgcgacgagcccctaccggtcgacgccggcgttg
ttcgaggactgcctcgccgcctgcatcgacgacgtcctgttccgtgtggtgcccgacgga
caggtgttctcccggctgcagtacgagacgcttcgcgaccgcgtgtccgcctcggtcatg
gaccgcatgttccagacggtcgccatcgtcgcccgcatcctgcaggccgcgcgcgacacg
gagaaggccatgaaggcggcgacgagcatgacgctgctcgcggccctcaccgacatgcga
ggccagctcgacggactggtcttcccgggcttcgtctcccggacgggctcagcacgactc
gaacatctgccccgctacctcgccggcatccgttaccgcgccgagcgactgacggacaac
ccgaaccgcgaccgggtgtggatgacggaggcgcagacggcgtcggcgcggttcgaggcc
gccggcggcacgatcccactgcccgccgaggctccggagcacctcgtgaaggcccggtgg
atgctcgaggagctccggatcagcctgttcgcccagcagctgggcacggccgaatcggtc
tcgttgcagcgcctgcagaaggtcctcgcgagctag
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