Plantibacter sp. PA-3-X8: EAO79_15495
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Entry
EAO79_15495 CDS
T05731
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAO79_15495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plap03019
]
EAO79_15495
Messenger RNA biogenesis [BR:
plap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAO79_15495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AZH84136
LinkDB
All DBs
Position
complement(3281106..3282782)
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AA seq
558 aa
AA seq
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MPNTIIDPPVLEPGTLRVIPIGGLGEIGRNMTCFEIDGKILIVDCGVLFPEEHQPGVDLI
LPDFTSIKDRLDDIVGVVLTHGHEDHIGAVPYLLKLRKDIPLIGSGLTLALIEAKLKEHR
IVPYTLPVKEGQIEALGPFDLEFVAVNHSIPDALAVFIDTDAGTVLVTGDFKMDQLPLDG
RLTDLRAFARLGEEGVDLFLVDSTNADVPGFTPLERSIGPVLDQVIAKSERRVIVASFSS
HVHRVQQVLDAAHAHGRRVAFLGRSMVRNMGIAADLGYLNVPEGLLIDYKKAKDLPEDKI
VYMSTGSQGEPMAVLSRMANLDHAIEPGPGDTVILASSLIPGNENAVYRVIDGLTKLGAT
VVHKGNAKVHVSGHAAAGELLYCYNILQPKNVLPVHGEYRHLVANQKLAIDSGVPAQNTF
IGEDGIVIDLKDGVAKVVGQLDVGLVYVDGSTVGEITDADLKDRRILAEEGFISVIVVVD
SKTGHIISGPEVHAKGFAEDDKVFADIKPKVAKALAEAAENGVRDTHALSQVIRRTVGRW
VNTSFRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaataccatcatcgatccgccagtcctcgagccggggacgctccgcgtcatcccc
atcggaggactcggcgagatcggcaggaacatgacctgcttcgagatcgacggcaagatc
ctgatcgtcgactgcggcgtgctcttccccgaagagcaccagccgggcgtcgacctgatc
ctgcccgacttcacctccatcaaggaccggctcgacgacatcgtcggcgtcgtgctcacg
cacggtcacgaggaccacatcggcgccgtgccgtacctcctgaagctccgcaaggacatc
ccgctgatcggttccggcctgacgctcgcgctcatcgaggcgaagctcaaggagcaccgc
atcgtcccctacaccctgccggtgaaggagggccagatcgaggcgctggggccgttcgac
ctcgagttcgtcgcggtcaaccactcgatcccggacgcgctcgcggtgttcatcgacacc
gacgccggcaccgtcctcgtgaccggtgacttcaagatggaccagctgccgctcgacggc
cgcctgacggacctccgcgccttcgcccgcctcggtgaagaaggcgtcgacctcttcctc
gtcgactcgacgaacgccgacgtgccgggcttcacaccgctcgagcggtccatcgggccg
gtcctcgaccaggtcatcgcgaagtccgagcgccgtgtcatcgtcgcgagcttctcgagt
cacgtgcaccgcgtccagcaggtcctcgacgcggctcacgcccacggccgccgggtcgcg
ttcctcggtcgttccatggtgcgcaacatggggatcgcagccgacctcgggtacctgaac
gtccccgagggcctgctcatcgactacaagaaggcgaaggacctccccgaggacaagatc
gtctacatgtcgaccgggtcacagggcgagccgatggccgtcctcagtcggatggcgaac
ctcgaccacgcgatcgagccgggcccgggcgacaccgtcatcctcgcctcgagcctcatc
ccgggcaacgagaacgcggtctaccgggtcatcgacggcttgacgaagctcggcgccacc
gtcgtccacaagggcaacgcgaaggtccacgtctccggtcacgcagccgccggtgagctg
ctctactgctacaacatcctccagccgaagaacgtgctcccggtccacggcgagtaccgt
cacctcgtcgcgaaccagaagctcgcgatcgacagcggtgtcccggcgcagaacaccttc
atcggcgaggacggcatcgtcatcgacctgaaggacggcgtcgcgaaggtcgtcggccag
ctcgacgtcgggctcgtctacgtcgacggctcgaccgtcggcgagatcaccgacgccgac
ctcaaggaccgtcgcatcctggcggaggagggcttcatctcggtcatcgtcgtcgtcgac
tcgaagaccgggcacatcatctccggccccgaggtgcacgcgaagggcttcgccgaggat
gacaaggtcttcgccgacatcaagccgaaggtcgccaaggcactcgccgaggcggcggag
aacggcgtccgcgacacgcacgcgctgtcgcaggtgatccgtcggaccgtcggccgctgg
gtcaacacgtccttccgtcgccgcccgatgatcgtcccgctcgtcatcgaggcctga
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