Candidatus Profftia lariciata: GII40_00133
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Entry
GII40_00133 CDS
T07821
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
plar
Candidatus Profftia lariciata
Pathway
plar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GII40_00133 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plar03400
]
GII40_00133 (sbcB)
Enzymes [BR:
plar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GII40_00133 (sbcB)
DNA repair and recombination proteins [BR:
plar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GII40_00133 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GII40_00133 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GII40_00133 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UDG81356
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All DBs
Position
282378..283811
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AA seq
477 aa
AA seq
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MKQTTQQNTFLIHDYETFGQNPALDLPAQFAGVRTDSNFNIIEEPLILYCRPADDYLPQP
EAVIITGITPQFALLNGINEAEFARQINRIFSVPGTCIMGYNNIVFDDEVSRNIFYRNFY
DPYAYSWQNGNSRWDLIKVLRACYSLRPEGINWPLNEQGLPSFKLEALSKYNNIQHNNAH
NAISDVYATIALARLVKLAQPRLFNYLFQLRSKHKLFKLFDIIDMKPLIHISSMFGVIKN
NTSLVVALAKHPTDKNTVIICDLAGDVSLLFKLDVNGLRERLYKRHSELYLDQLSPLPIK
LVHLNQCPILVPEYTLRAKDYLRLGLDRQQCMNNLKYLQNHPWVSEKIITVFTHAKPLKI
TDNVDAQLYNGFFNYSDQKAMQIIRKTLPHNLSNLSLKVKDKRILSLLFRYRARNFQNTL
TSHEYNIWQLHRQIILNPEKIKMYTLKLKKLYFFYKKETEKTTKLKELFKYMRQLIN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaaaccacacaacaaaatacttttcttattcatgattatgaaacttttggacaa
aatcctgcgctagatttacctgcacaatttgcaggcgtacgcactgattctaattttaat
attattgaagaacctttaatattatactgtcgtccagcagatgattatttacctcaacca
gaagccgtaataattactggtattacacctcagtttgctttattgaatggaatcaatgag
gcagaatttgcacggcaaattaatcgtatctttagtgtacctggtacctgtattatgggt
tacaataatattgtttttgatgatgaagttagtcgtaatattttttatcgtaatttttat
gatccttatgcttatagctggcagaatggtaattctcgttgggatttaattaaagttttg
cgtgcttgttattctttacgtcctgaaggtattaactggccattgaatgagcaaggatta
ccaagttttaagctagaggctttatctaaatataataatattcaacataataatgctcat
aatgctatatctgatgtatatgctactattgcacttgcaaggttagttaaattagctcag
cctagattatttaactatttatttcagttaagaagtaagcataaactttttaagttattt
gatataatagatatgaagcctttaatacatatttctagcatgtttggcgttattaaaaat
aataccagtttagtggttgcactagcaaaacaccctacagataaaaatactgttattata
tgtgatcttgctggagatgtctctttattatttaagttagatgtaaacggattacgtgag
cgtctctataaacgacatagtgaactatatttagaccaattatctcctctacctattaag
ttagtacatttaaatcaatgtccgatattagttcctgagtatactttacgtgctaaagat
tatctacgtcttggtttagatcgtcagcaatgtatgaataacttaaaatatttacaaaat
catccttgggtaagtgaaaaaattattactgtttttacacatgctaagcctttaaaaatt
acagataatgtagacgctcaactttataatggattctttaattattctgatcaaaaagca
atgcaaattattcgtaaaactttaccgcataatttatcaaatctatctcttaaagtaaaa
gataaacgtattttatctttattatttcgttatcgagcacgtaacttccaaaatactctt
acttctcatgaatataatatttggcaattacatcgtcaaataatattaaatcctgaaaaa
ataaaaatgtatactttaaaactaaaaaaactatattttttttataaaaaagaaactgaa
aaaacaactaaattaaaagaattatttaagtatatgagacagttaattaattaa
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