Candidatus Profftia lariciata: GII40_00281
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Entry
GII40_00281 CDS
T07821
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plar
Candidatus Profftia lariciata
Pathway
plar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII40_00281 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plar03019
]
GII40_00281 (rne)
03009 Ribosome biogenesis [BR:
plar03009
]
GII40_00281 (rne)
Enzymes [BR:
plar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GII40_00281 (rne)
Messenger RNA biogenesis [BR:
plar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GII40_00281 (rne)
Ribosome biogenesis [BR:
plar03009
]
Prokaryotic type
rRNA processing factors
GII40_00281 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
RACo_linker
Motif
Other DBs
NCBI-ProteinID:
UDG81486
LinkDB
All DBs
Position
588387..591548
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLINATQHEELRVALVDGQRLYDLDIESTGHEQKKANIYKGKITRIEPSLEAAFVEY
GAERHGFLPLKEIAREYFPSNYAYYGRPNIKDVLRECQEVIVQVDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRIELKEALSSLQLPDGMGLIIRTAGLGKSAEAL
QWDLSFRLKHWDAIKKAAKGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPDILALA
KQHITALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALI
AIDINSARATRGGYIEETAFNTNLEATDEIARQLRLRDLGGLIVIDFIDMTIIRHQREIE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHICPRCNGTGTVRDNESLS
LSILRLIEEEALKDNTNEVHAIVPIPVASYLLNEKRESVSIIEKRQDGVKVIVVPHDQMQ
TPHYSIVRIRHGEVTSTLSYLLPQLHEAELLTTEEDVILERKRSEPPALSTFFVDVKNPL
VKDSTNFVTKVTEQIVAESSLVKRIFSILKNMFSILETEQKQVTKSITPTKKSYHYHQNN
RDYNIRKNENNNCDDCNEPNNHVNTKNSKQSYLTPSVNKEVTLHTSVEEYNINPILTASN
HNDHKLHLMKDQYQIQKLVTPLENKHDIVVTTIKDSIYEKNKHLSSNYKGKLNNRISLKN
LSNNEVIKLTETTFVANIADNNTTILQANTELVSYNNDDTVKNIIPRRSRRSPRHLRVSA
QRRRRYRSDRYPTHSPVPLIFAVASPEIAFGKVWIHYPIVKKSITIIPENQQSLIKQLQI
NNHTDQISKKNIAQSIVIKKLPVKSMTSEPVIIESMVTSIIATSITEVPNTSHKIEKVIQ
ETTKILNTTENKKIKLKELVKTTSTIKPKNIIPIVTNTNKIDVAINNSLTIETIPEIIPT
ANIKNKRFVVKSVIIETDIIKSTMNNSLMTNHLQKVVTAPITKVPAEDKCMPDILVINTV
DYPTINMHDKNGAGAHAAINKSTAPTAKPLVVD
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaacatgaagagttgcgtgttgctcttgtcgat
gggcaacgtctgtatgatttagatattgaaagtacaggtcacgaacaaaaaaaagcaaat
atctacaagggaaaaataactcgaattgagccaagtttagaagctgcttttgtagaatat
ggtgctgaacgacatggttttttacctcttaaagaaatagcccgcgaatattttcctagt
aattatgcttattatggcagaccaaatattaaagatgtgttacgcgaatgccaggaagta
attgtacaagttgacaaagaagaacgtggcaccaaaggtgcagcattaacaacttttatt
agcttagctggaagctatttggtattaatgcctaataatccacgtgcaggtggtatttct
cgtcgtatagaaggtgatgatcgtatagagctaaaagaagcattatcttctttgcagctt
cctgatggtatggggctcattattcgtacagcaggattaggtaaatctgctgaagcacta
caatgggatttatcatttcgcttaaaacattgggatgctattaaaaaagcagctaaagga
cgttctgcaccatttttaatacatcaagaaagtaatgttattgttcgtgcatttcgtgat
tacctacgtcctgatattggtgaaatacttattgataatcctgatattcttgcactagct
aaacaacatattacagctttaggtcgtcctgattttagtagtaaaattaaactatataca
ggtgaaattccgttatttagtcattatcagattgaatctcaaattgagtcagcttttcaa
cgcgaggtacgtctaccttctggaggttctattgtaattgattctactgaagctctaata
gctatagatattaactctgctcgtgcaactcgcggaggatatattgaagaaacggcattt
aatactaatcttgaagcaactgatgaaattgctcgtcaattgcgtttacgtgatcttggt
ggtcttattgttattgatttcatagatatgacaattattcgacatcaaagggaaattgaa
aaccgtttacgcgatgctgttcggcaggatagagcgcgtattcagataggtagaatttct
cgatttggtttgcttgaaatgtctcgtcagcgtctcagtccatcattaggtgaatccagt
catcacatatgtcctcgctgtaatggtactggtactgtacgtgataatgaatcattgtct
ttatctattcttcgtttaattgaagaagaagcattaaaagataacactaatgaagttcat
gctattgttcctattcccgttgcttcttacttgcttaatgaaaaacgagaatcagtaagc
atcattgaaaaacgtcaagacggtgtaaaagtaattgtagtacctcatgatcaaatgcaa
acaccacactattcaatagttcgtatacgtcatggtgaggtaactagtacgctaagctat
ctactacctcagttacacgaagcagaacttttaacaactgaggaagatgttattcttgag
cgtaaaagatctgaaccaccagcactatctactttttttgtagatgttaaaaatccatta
gttaaagatagtactaattttgtaacaaaagttactgagcaaattgtagcagaatctagt
ctagttaaacgtatattctcgatattaaaaaatatgttttcaattttagagacagaacaa
aaacaagttactaaatctattacaccaacaaaaaaatcttatcattatcatcaaaataat
cgtgattataatattcgtaagaatgaaaataacaattgtgatgattgtaacgaacctaat
aatcatgttaatactaaaaatagcaaacaaagttatttaacaccttctgttaataaagaa
gttactttgcacacttctgttgaagagtataacattaatcctatacttactgcatctaac
cataacgatcataaattacatcttatgaaagatcaatatcaaatacagaaattagttaca
cctttggagaataaacacgatattgttgtcactacaataaaagatagtatctatgaaaaa
aataagcatttatctagtaattataaaggcaaactcaataataggatcagtttaaaaaat
ctatctaataatgaagttataaaattaactgagactacctttgttgctaatattgctgac
aataatactacaatactacaagcaaatacagagttagtatcttataataatgacgataca
gttaaaaatattatacctcgtcgttctcgacgttcaccacgtcatctgcgtgttagtgct
caacgtcgtcgtcgctatcgcagcgatcgttatcctactcattctcctgtacctcttatc
tttgctgtagcatctcctgaaattgcatttggtaaagtatggattcattatccaatagta
aaaaaatcaattacaattataccagaaaatcaacagtctttaattaagcaattacagatt
aacaatcatactgatcaaatttcaaaaaaaaatatagctcaatctatagtgattaaaaaa
cttccagttaaatcaatgacttctgaaccagtaataattgaatcaatggtaacttctata
attgcaacatcaattacagaagtgccaaatacatctcataaaattgaaaaagtaatacaa
gaaactacaaaaattttaaatacgactgaaaataaaaagataaaacttaaagaattagtt
aaaacaacgtctactataaaaccaaaaaatattattccaatagtcactaacactaacaag
attgatgttgctattaataattctttaacaatagaaacaataccagaaatcatacctact
gctaatataaaaaataaaagatttgtagtcaagagcgttattattgaaacagatattata
aaatctactatgaataactctttaatgacaaatcatttgcaaaaagtagtaacagctcca
ataactaaagttccagcagaagataagtgtatgcctgatattttagtaataaatactgta
gattatcctactataaatatgcatgataaaaatggagctggtgctcatgcagctataaat
aagtcaacggcaccaacagctaagccattagtagttgattaa
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