Candidatus Profftia lariciata: GII40_00381
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Entry
GII40_00381 CDS
T07821
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plar
Candidatus Profftia lariciata
Brite
KEGG Orthology (KO) [BR:
plar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GII40_00381 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plar03021
]
GII40_00381 (rpoD)
Transcription machinery [BR:
plar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GII40_00381 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UDG81573
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Position
768019..769839
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AA seq
606 aa
AA seq
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MEHNSESQFKLLVTKGKEQGYLTYSEVNDHLPDDIIDSDQIADIIRMINDMGIQVLEKAP
DADDLMLAENIDDEDAAEAAVQVLSSVEAEIGRTTDPIRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQHSVIEYPEAITYLLEQYEHVQAEEASLSDIITGFVDPYAEEDLILTATN
IGSELSSEDLHEDDGDEENTDDNNIDQELAQQKFSELREQYAKTHIAIKTYGRRHAIVEK
EILNLSEVFKQFRLVPKQFDYLINSMRHMMDRVRTQERLIMKLCVEQSKMPKKSFITLFT
GNETNTTWFDAALAMAKPWGDRLKYVREDVEYSLNKLHEIEEETDLTIEQVKDINRRMSI
GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEIGREPTPEELAERM
MIPEDKIRKVLKIAKEPISMETPIGDDEDSHLSDFIEDTTLELPLDSATSESLRSVTRDI
LSGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL
RSFLDD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggagcataactcagagtcacagttcaaacttcttgttactaaaggtaaggaacaaggc
tatcttacctattctgaagtcaatgatcatttgccggatgatataatcgattcagaccaa
atagcagatatcattagaatgattaatgacatgggcattcaagtgctggagaaagcacct
gacgctgatgatttaatgctagcagaaaacattgatgatgaagatgctgccgaagcagct
gtacaagtattatcaagtgtagaagctgagataggaagaactactgacccaatacgtatg
tacatgagagaaatgggcactgtagaacttttgactcgtgaaggagaaatagatatcgct
aaacgtatcgaagatggtattaatcaagttcagcattctgtaattgagtatccagaagca
attacatacttacttgaacaatatgagcatgttcaagcagaagaagctagtttatctgat
attattactggttttgtagatccttatgcagaagaagatttaatactaacagcgactaat
attggttctgagttatcttcagaagatctgcatgaagatgatggagacgaagaaaataca
gatgataacaatatagaccaagagttagcacaacaaaaattctctgaattacgtgaacaa
tatgcaaaaacacatatagctattaaaacttatggtcgtagacatgcaatagtagaaaaa
gaaatactaaatctttcagaagtatttaaacaatttcgtttagtaccaaaacaatttgat
tatcttattaacagtatgcgtcatatgatggatcgggtacgtactcaagaacgtttaatt
atgaaattatgcgttgaacaaagtaaaatgccaaaaaaaagttttattactttatttact
ggcaatgaaactaatacgacttggtttgatgctgcgttagccatggccaaaccatgggga
gataggctaaaatatgtacgtgaagatgttgaatatagcttaaataaattacatgaaata
gaagaagaaactgatcttacgatcgaacaagtaaaagatataaatcgtcgtatgtctatt
ggtgaagcaaaagctcgtcgtgcaaaaaaagaaatggttgaagctaacttacgtttagtc
atttctattgctaaaaaatatactaatcgtggtttacagtttctagatttaattcaagaa
ggaaatatagggttaatgaaagcagttgataagtttgaatatcgtcgtggttataaattt
tcaacttatgcaacatggtggattcgtcaggccattacccgttctatagcagatcaagca
cgtactatacgtattcctgtacacatgattgaaactattaataaacttaatcgtatttct
cggcaaattttacaagaaataggacgcgaacctacaccagaagaattagctgaacgtatg
atgataccagaagataaaatacgcaaagtattaaaaatagctaaagaacctatttctatg
gaaactcctataggtgatgatgaagattcacatttaagtgattttattgaagatacaaca
ctagaattaccattagattctgctacttcagaaagtttacgttctgtaactcgtgatatt
ttatctggcttaacaacacgtgaagctaaagtattacgtatgcgttttggtattgatatg
aacacagaccatactttagaggaagtgggtaaacaatttgatgtaactcgcgaacgtata
cgtcagatagaagcaaaagcactacgcaaactacgtcatccaagccgctctgaagtatta
cgtagttttttagacgattaa
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