Candidatus Profftia lariciata: GII40_00480
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Entry
GII40_00480 CDS
T07821
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plar
Candidatus Profftia lariciata
Brite
KEGG Orthology (KO) [BR:
plar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plar03032
]
GII40_00480 (topA)
03400 DNA repair and recombination proteins [BR:
plar03400
]
GII40_00480 (topA)
Enzymes [BR:
plar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GII40_00480 (topA)
DNA replication proteins [BR:
plar03032
]
Prokaryotic type
DNA Topoisomerases
GII40_00480 (topA)
DNA repair and recombination proteins [BR:
plar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GII40_00480 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Toprim
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UDG81668
LinkDB
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Position
912928..915513
Genome browser
AA seq
861 aa
AA seq
DB search
MSTSLVIVESPAKAKTISQYLGKNYVVKSSVGHIRDLPTSRLASKREILSTKNKEKNKIH
QNKHEILIKRMGIDPYQEWTASYEILPGKEQIVAELKSLAKTVDHIYLATDLDREGEAIA
WHLREVIGGDENRYSRVVFNEITQKAIQQAFNKPGKLNINRVYAQQTRRFMDRIVGYMIS
PLLWKKIARGLSAGRVQSVAVRLIVDREHDIKTFSPEEYWELRANLNVNNIFLQMQVTNY
KNKIFKPINNQDTHAAIEDLEKAKYIVFDRVDKLTNSNPRAPFITSTLQQTANTRLNFSV
KKTMMLAQLLYEAGHITYMRTDSKNLSQDALNMVRNYINQLFGKQYLPKKPNTYAQVQNS
QEAHEAIRPTNIYMISEYLNNMGDDAQKLYNLIWLQFVSCQMTSAKYNFTTIYVKAGDYI
LQTKRRTVYFDGWTKIIPQVCKEIEDDTLPFIKVGTHLIMQQLLPLQRFTKPPVRFNEAS
LVRELEKRSIGRPSTYASIISTIQDRGYVRIKHRCFYAEKIGEIVTYSLKNNFPELINYD
FTAHMEDDLDQVANANKDWKILLDNFFQNFSQQLFIAENDPKDGGMRTNHMVKTNILCPT
CQRQMGIRIASTGIFLGCSGYKITQKEKRCKTTINLIPEEEVVEGDSVKTSSLLDIQKKC
LHCGTTMDGYLIDNHRKLYICGNNPNCEGYEIIKGNFLIKGYHGPIVECKQCQSQMQVKI
GRFGKYMACINQDCKNTCKILRNGNLAPQKESPIPLPELPCKKSDAYFILRDGTVGIFLA
ANTFPKSRETRAPLVEELARFKERLPKKFHYIANAPQKDPKGNKTIVRFNRKTKEQYIAS
ESNGKATGWTAFFTGGKWIEN
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatctctcgtaatagttgagtctccggcaaaagccaaaactatcagtcaatat
ttaggtaagaactacgtggtaaaatctagtgtaggacatattagagatttaccaactagt
aggttagctagtaaacgagagatactctctacaaaaaataaagaaaaaaataaaattcat
caaaataagcatgaaatattaattaaacgcatgggtattgatccttatcaagaatggaca
gcgtcctatgaaatacttccaggtaaagaacaaattgttgcggaattaaaatcattagca
aaaacagttgatcatatttatcttgcaactgatcttgatcgtgaaggagaagctattgca
tggcatttacgtgaggtaattggcggagatgaaaatcgctatagccgcgtagtatttaat
gaaattactcaaaaagcaattcaacaagcatttaataaacctggtaaattaaatattaat
agagtttatgctcaacagactcgtcgttttatggaccgaatagtaggttacatgatttct
ccactgctatggaaaaaaattgcccgtggtttatcagcaggacgtgtacaatctgttgct
gtgcgtttaatagtggatcgtgaacatgatattaaaaccttttctcctgaagagtattgg
gaattacgtgctaatttaaatgtaaataatattttcttacaaatgcaagttactaattat
aaaaataaaatatttaaacctattaacaatcaagatactcacgctgctatagaagatctg
gaaaaagcaaaatatatagtatttgatcgtgtagataaactaactaatagtaatcctcgt
gccccatttatcacttctacgttacagcaaacagcaaatacacgtttaaattttagtgta
aagaaaacaatgatgctagctcaactactatatgaagctggtcatattacttatatgcgg
actgattcaaaaaatcttagtcaggatgcattaaatatggtacgtaattatattaatcaa
ctttttggtaaacagtacctaccaaaaaaacctaatacttatgctcaagttcaaaattct
caagaagcacatgaggctattcgtcctactaatatatatatgatctctgaatatttaaat
aatatgggagatgacgcacagaagttatataatcttatctggcttcaatttgtatcttgt
caaatgacatcagcaaaatataattttactacaatttatgttaaagcaggcgattacatt
ctgcaaacaaaaagacgtactgtatattttgatggctggacaaaaataatacctcaagta
tgcaaggaaattgaggatgatacattaccttttattaaagtaggtactcatctaattatg
cagcaactattaccactacaacgatttactaaaccacctgttcgttttaacgaagcatct
ttagtaagagaattagaaaaacgtagtattggtcgtccttctacttatgcatcaattatt
tcaacaattcaggatcgcggatatgtacgtattaagcatcgttgtttttatgcagaaaaa
attggagaaattgttacttatagtttaaaaaataattttcctgaactaattaactatgat
tttactgctcatatggaagatgacttagatcaggttgcgaatgctaataaagattggaaa
atattattagataacttttttcaaaattttagtcagcaactttttattgctgaaaacgat
cctaaagatggtggtatgcgtactaatcacatggttaaaaccaatattctctgtccaacc
tgtcaacgtcaaatgggtattcgtattgcaagtactggtatatttttaggttgttctgga
tataaaataacacaaaaagagaagaggtgcaaaactacaattaatcttattcctgaagaa
gaagtggtagaaggagatagtgtaaaaactagctcattgttggatatacaaaaaaaatgc
ttacattgtggtactacaatggatggttatcttattgataatcatcgtaaactatatata
tgtggtaataatccaaattgcgaaggttatgaaattattaaaggaaatttcttaattaaa
ggttatcatggtccaattgttgaatgcaaacaatgtcaatctcaaatgcaggtaaaaata
ggacgttttggtaaatatatggcttgtattaatcaagactgcaaaaatacttgtaaaata
ttacgtaatggtaacttagctccccaaaaagaatctcccattccattaccagagctacca
tgtaaaaaatcagacgcatattttattctacgtgatggaactgtaggtatattcttagca
gctaatacttttccaaaatcgcgtgaaacacgtgctcctttagtagaagaattagctcgc
tttaaagaacgtttacctaaaaaatttcattatatagcaaatgcaccacaaaaagatcct
aaaggcaataaaacgatagtacgctttaatcgtaaaactaaagagcaatacattgcttca
gagagcaatggaaaagctactggttggacagcattttttacaggaggtaaatggattgaa
aattaa
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