Candidatus Profftia lariciata: GII40_00567
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Entry
GII40_00567 CDS
T07821
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plar
Candidatus Profftia lariciata
Pathway
plar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII40_00567 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plar03021
]
GII40_00567 (rho)
03019 Messenger RNA biogenesis [BR:
plar03019
]
GII40_00567 (rho)
Transcription machinery [BR:
plar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GII40_00567 (rho)
Messenger RNA biogenesis [BR:
plar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GII40_00567 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA_22
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UDG81745
LinkDB
All DBs
Position
1081308..1082567
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENVGLENLARMRKQDIIFAILKQHAKSGEDIFGYGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANARLYMQRGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELHKMWILRKIIHPMGEIDAMEFLMNKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtttctgagttaattactctcggcgaaaat
gtgggtctcgaaaatttagctcgtatgcgcaaacaagatataatttttgcaatcttaaaa
caacatgcaaaaagtggcgaagacatcttcggttatggggtgttagaaatattacaagat
ggctttggatttcttcgttctggagatagctcatatcttgctggtcctgatgatatttat
gtatctccaagtcaaatacgtcgttttaatttacgtaccggtgatactatttctggtaaa
atacgtccaccaaaagaaggtgagcgttattttgctttattaaaagtcaacgaagtaaac
tacgataaaccagaaaatgcccgtaataaaattctatttgaaaaccttactcctttacat
gcaaacgctcgtctttatatgcaacgaggtaatggttctactgaagatttaactgctcgc
gtactggatttagcttctcctatcggtcgtggtcagcgaggtcttatagtggctccgcca
aaagctggtaagactatgcttttgcaaaatattgcacaaagtatagcttataaccatcct
gaatgtactttaatggttctactgatagacgaacgtccagaagaagttacagaaatgcaa
cgtttggttaaaggtgaagtaattgcatctacttttgatgagccagcttcccgtcatgtt
caagttgctgaaatggtaatagaaaaagctaaacgtttagtagaacataaaaaagatgtt
attattcttttagactccattactcgtttagctcgtgcttataatactgtggtacctgca
tcaggtaaagttcttactggtggcgtagatgccaatgctttacatcgtccaaaacgattt
tttggtgctgcacgtaatatggaagaaggaggtagtcttacaattattgctactgcttta
gttgatacaggctctaaaatggatgaggtgatatatgaggaatttaaaggtaccggtaat
atggagttacacctttctcgtaaaattgctgaaaaacgtgtatttccagcaattgactat
aatcgttctggtactcgtaaagaagaactgctaacaacttctgaagaactacataaaatg
tggatcttacgcaagataattcaccctatgggtgaaatagatgcaatggaatttctcatg
aataaactagcaatgacaaaaacaaatgatgatttttttgatatgatgaaacgttcgtaa
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