KEGG   Parasalinivibrio latis: NF212_00235
Entry
NF212_00235       CDS       T11132                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
plas  Parasalinivibrio latis
Pathway
plas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:plas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NF212_00235 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plas03021]
    NF212_00235 (rho)
   03019 Messenger RNA biogenesis [BR:plas03019]
    NF212_00235 (rho)
Transcription machinery [BR:plas03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NF212_00235 (rho)
Messenger RNA biogenesis [BR:plas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NF212_00235 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB AAA_22 S1CSD-TOTE-2 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: WWE58632
LinkDB
Position
1:53297..54562
AA seq 421 aa
MNLTELKNRPVSDLVALGESMGLENLARLRKQDIIFAILKQHAKSGEDIFGNGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDRPDNARNKILFENLTPLHANERLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
IRSGTRREELLTKTDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDMMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaactgaagaaccggcctgtgtcggatttggtggctctcggcgaaagc
atgggactggaaaaccttgcccgcctgagaaaacaagacatcatttttgccatccttaag
caacatgcgaaaagcggcgaagacatttttggcaacggcgttctggaaattcttcaggat
ggttttggtttcctgcgtagtgcggattcttcataccttgccggcccggatgacatttat
gtctccccaagccagattcgtcgcttcaacctgcgtaccggcgataccatctctggtaaa
attcgcccaccgaaggaaggcgaacgttattttgcgctgctgaaagttaacgaagttaac
tacgaccgcccagacaacgcccgcaacaaaatcctgtttgaaaacctaaccccactgcac
gccaatgagcgcctgcgcatggagcgtggtaacggttcaacagaagacatcactgcccgt
gtcctggatctggcatcgccaatcggtaaaggccagcgtggcctgatcgtggcaccgcca
aaagccggtaagaccatgctgctgcaaaacattgcacagagcattgcttacaaccaccct
gagtgtgaactcatggttctgctgatcgacgagcgtccggaagaggtcaccgagatgcag
cgtctggttaagggtgaagtggttgcatctacgttcgatgaaccagcaagccgccacgta
caagttgctgaaatggttatcgaaaaggccaagcgcctggttgagcacaagaaagacgtg
gttatcctgctggattccatcacccgtctggctcgtgcctacaacaccgtggttccttca
tcaggcaaggtactgaccggtggtgtggatgccaacgcactgcaccgtccgaagcgtttc
ttcggtgcggcacgtaacgtagaagaaggcggcagcctgaccatcatcgcaactgcactg
gttgataccggttctaagatggatgaggtaatctacgaagagtttaagggtacaggtaac
atggaactgcacctgtctcgcaagattgcagagaagcgtgtgttcccggctatcgacttc
atccgttccggtacccgccgtgaagagctgctcaccaagaccgatgagctgcagaagatg
tggatcctgcgtaagattgttcacccaatgggcgaaatcgacgcgatggaattccttatc
gacaagctggcgatgaccaagaccaacgacgaattctttgacatgatgcgtcgtcagaag
tcgtaa

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