KEGG   Parasalinivibrio latis: NF212_01560
Entry
NF212_01560       CDS       T11132                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
plas  Parasalinivibrio latis
Pathway
plas02024  Quorum sensing
plas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:plas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NF212_01560 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NF212_01560 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plas03019]
    NF212_01560 (hfq)
   03036 Chromosome and associated proteins [BR:plas03036]
    NF212_01560 (hfq)
Messenger RNA biogenesis [BR:plas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NF212_01560 (hfq)
Chromosome and associated proteins [BR:plas03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NF212_01560 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: WWE58866
LinkDB
Position
1:301177..301458
AA seq 93 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVNHHHNNTTGGHPGQGERPQQDKTEE
NT seq 282 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatcactacaagacccatttttgaatgcactccgtcgtgaacgggta
cctgtttcaatctatctggtaaacggaattaagttgcaaggtcagattgaatcatttgat
cagtttgtgatcctgctgaaaaacaccgtaaaccaaatggtgtacaagcacgccatctca
actgtggtaccagcccgtccggtaaatcaccaccataacaacaccaccggcggccatcca
ggccagggcgagcgtccacaacaagacaaaaccgaggagtaa

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