Parasalinivibrio latis: NF212_02860
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Entry
NF212_02860 CDS
T11132
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plas Parasalinivibrio latis
Brite
KEGG Orthology (KO) [BR:
plas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plas03009
]
NF212_02860 (rlmD)
Enzymes [BR:
plas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NF212_02860 (rlmD)
Ribosome biogenesis [BR:
plas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NF212_02860 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_11
DOT1
Ubie_methyltran
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_23
MTS
Methyltransf_12
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
WWE59093
LinkDB
All DBs
Position
1:558180..559496
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AA seq
438 aa
AA seq
DB search
MARFFKPQKKKALDTQHKSLTVTRLDHHGDGIGFLDKRPVFVPGVLPGEEALVQLVEQKK
NYARARLIKRLSDSPERVKPVCPHYAECGGCNLQHCDHDAQVSHKQAVLADLMNKLAGAS
ATQDAPLTSSPLGYRRRARLSLRVGKDGALQMGFRRRGADNIVDVEVCPVMSQPLQALLE
PLRKLFGSLRGRRVLGHAELAEGAYGVVLLVRTTKALVVDDVVSLTGFAENAGITLYIHQ
GNDAPVRVSGNQPAYNLGELSLAFEPTDFIQVNGSVNEKMVAQALAWLDVQPDDRVLDLF
SGVGNFSLPLAEIASAVVGVEGVDEMVERAAANARRNRQENVAFYQANLEELPHSAPWTK
EKFTKVLLDPARAGAAGAMEFVAQLRPERIVYVSCNPATLSRDSQQLLSAGYKLEKLGML
DMFPHTGHLESMALFVKS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtttttttaaaccccagaagaaaaaagctctcgatacccagcataaatccctg
acagtaacccgacttgaccaccatggtgacggtatcggttttcttgataagcgccctgtg
tttgtacccggtgtgctgcctggggaagaggctctggtccagttggttgagcaaaagaaa
aactatgcccgggcacgcctgataaagcgcctttcagactctcctgagcgggtaaagccg
gtttgtccccattatgctgaatgcggtggctgtaacctccagcactgtgaccatgacgcc
caggtgtcgcacaagcaggcagtgctggcggatctgatgaataagcttgccggtgcctcg
gcaacacaggacgcaccattgacatcgtctccgctcggttaccgcaggcgagcacgtctc
agtcttcgcgtcggcaaagatggtgccttgcagatgggtttccgccgccgcggtgcagac
aatatcgttgatgtcgaggtttgcccggtcatgagccaacccctgcaggcgcttcttgag
ccgctacggaagctgtttggcagccttcgtggccgccgtgtcctggggcatgctgagctg
gcagaaggggcatacggcgttgtgttgctggtgcggactaccaaggcactggtcgttgat
gacgttgtgtccctgaccggttttgccgaaaacgcaggtatcacgctgtacatccaccag
ggcaatgatgcaccggttcgggtaagtggtaaccagcccgcctataatctgggcgaactg
tccctggcatttgaaccgactgactttattcaggtcaatggaagcgtaaacgaaaaaatg
gttgcccaggcactggcgtggctggatgtacagcctgacgatcgggtacttgatctgttc
agcggtgtgggcaatttcagcctgccgctggctgaaattgcatcggcagtcgttggtgtt
gaaggtgtcgatgaaatggtggaacgggctgcggcgaatgcccggcggaaccgtcaggag
aacgtggcgttttaccaggccaacctggaagagctaccgcacagtgcaccgtggacgaaa
gaaaaattcacaaaagtcttactggatccggcccgagccggggctgcaggtgctatggag
tttgtggcacaattgcgtccagaacgtatcgtttatgtgtcttgtaatccggccactttg
tcgcgggacagccaacaactgctgtcagccgggtacaagctagaaaagctgggcatgctc
gacatgttcccacacaccggacacttggagtcgatggcgcttttcgtcaaatcataa
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