Parasalinivibrio latis: NF212_07630
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Entry
NF212_07630 CDS
T11132
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plas Parasalinivibrio latis
Pathway
plas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NF212_07630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plas03400
]
NF212_07630 (mfd)
Enzymes [BR:
plas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF212_07630 (mfd)
DNA repair and recombination proteins [BR:
plas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NF212_07630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
DUF2963
Motif
Other DBs
NCBI-ProteinID:
WWE59932
LinkDB
All DBs
Position
1:complement(1596804..1600277)
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AA seq
1157 aa
AA seq
DB search
MKPIPVISALQTPKAGEQQHLGNLIGSSLALTIGDIANRHNGPVLLITPDSQTARRLEGE
VSQFTPEKCEVFPDWETLPYDNFSPHQDIISERLSLLYQMPQLVSGIVIMPVNTLLQRVL
PKSFLTKHALVVKKGDLLSLEKLRSQLESAGYRHVDQVMEHGEYASRGSILDLFPMGSQQ
PLRIDFFDDEIDTIREFDPETQRSITEIDSISLLPAREFPTDPEAIEQFRGRWRERFDAR
REPESVYQQVSKRTLPAGIEYWQPLFFDEMATLFDYLPDNTLVVSVGDLEQAGKQFLADA
ENRFDQRRVDPMRPLLAPDSLWLETDEMFSLLKPIPRIMLTDAQVEGKKWRTNISCQPLP
DLNVNHQLKEPMGALRQFCEQFSGKVVFSVESEGRREALLDMLSRIKLRPMVCNSVYEAL
DAPSRVTLIIGQAERGFILEDAGFSLVCETDLFGERVAQRRRRNDKKAAVSSETIIRTLA
ELQPGQPVVHLKHGIGRYEGLQTLEAGGLKTEFVTLEYQKGSKLYVPVSSLHLLTRYTGG
AEEAAPLHKLGGEAWEKARRKAAEKVRDVAAELLDVYAKRAVKPGFAFKHDHEAYIDFIN
GFPFEETHDQALAINAVLSDMCRPIAMDRLVCGDVGFGKTEVAMRAAFLAVHNAKQVAVL
VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQNQILADVEAGKVDILIGTHKLIQ
GTIKFADLGLLIVDEEHRFGVRQKEKIKAMRADVDILTLTATPIPRTLNMAMSGIRDLSI
IATPPSRRLAVKTFVRERDEVTVKEAILREIMRGGQVYFLHNDVESIEKAASDLAELVPD
ARITVAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTIIINRADSFGLAQ
LHQLRGRVGRSHHQAYAYLLTPHPKRMSKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGDEQSGQIQTVGFTLYMEMLEQAVESLKEGKEPSLDDLLNEQTEVELRVPALLPDD
YMPDINTRLSLYKRVASASNDDELDELRVELIDRFGLLPEPAKNLLTLARLKLSATDLGI
RKLELGPMGGAIEFNENAPIDPAFLVGLLQSSPQTYRLDGPTRLKVVEAIKENPDRIRFA
QTLIEQFENHKVTAVQA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaattcctgttatttccgccctccaaacgccaaaagccggagagcagcagcac
ttggggaaccttatcggttcctctctggcactgaccattggtgatatcgccaaccgccac
aacggccccgtactcctgattacccccgacagccagactgccaggcggcttgagggtgaa
gtcagccagtttacgccggaaaaatgtgaagttttcccagattgggaaaccctcccgtac
gataatttttcccctcaccaggacatcatctccgagcgattgtctctgttgtaccagatg
ccacaactggtgtctgggatcgttatcatgccggtcaatacgcttctccaacgggtatta
cccaaaagcttcctgaccaagcatgcattggtagtaaaaaaaggcgatctgctttcgttg
gaaaagctgcgcagccaattggaaagtgccggttaccgccatgttgatcaggtaatggag
catggggaatacgcctcacggggttcaatccttgatctcttcccgatgggcagccagcaa
cccctgcgaatcgatttctttgacgacgaaattgacactattagggagtttgatccggaa
acccagcgttcaattactgaaatagacagtatcagcctactcccggctagagaattcccc
acagatccggaagccatagagcagttccgtggtcgctggcgtgaacggtttgacgcccgc
cgggagcctgaatcggtgtaccagcaggtgagcaagcgtacattgcctgccggtatagaa
tactggcagcctctgttctttgatgaaatggcaactctgttcgattacctgccggacaat
actctggtggtatccgtaggtgatttggaacaagcaggaaagcagtttcttgcagatgcg
gaaaaccggtttgaccagcgccgtgttgaccctatgcgcccactgcttgccccagattcc
ctatggcttgaaaccgatgaaatgttctctttgctcaagcctattccgcgaatcatgctc
actgatgctcaggttgaaggtaaaaaatggcggactaatatcagttgccagccactgccg
gacctgaatgttaaccatcagcttaaagaaccaatgggtgcgttgcgccaattttgcgag
cagttcagtggcaaggttgtcttctcagttgagtcagaaggccgtcgtgaagcgctgctg
gatatgctgtcgcggattaaactgcgaccaatggtttgcaactcggtctacgaagcactt
gatgcacccagccgggtcacgctgattattggtcaggccgagagaggtttcatcctcgaa
gatgcgggtttttcccttgtctgtgaaactgatctgttcggcgagcgggtagcccaacgc
cgtcggcgtaatgacaaaaaagcggctgtcagcagcgaaaccataatccgtacgcttgct
gaactccagccgggccaaccggtcgtccatctcaaacacggcataggtcggtatgagggc
ttgcagacactcgaagccggtggcctgaaaactgaattcgtcaccttggaataccagaaa
ggttccaaactctatgtgccggtatcttcccttcaccttctcacccgctataccggaggg
gcagaagaggcagccccactccacaaacttggtggagaagcctgggaaaaagcgcgccgc
aaagcagctgaaaaggtacgggacgttgctgctgagcttctggatgtctacgccaaacgt
gcggtcaaaccaggctttgcgttcaagcacgaccatgaagcttatatcgatttcattaac
ggcttcccctttgaggaaacccacgatcaggcacttgcaattaatgctgtgctttccgac
atgtgccgccccattgccatggatcgtctggtgtgtggtgatgttggcttcggaaaaaca
gaagtggcaatgcgggcagctttccttgccgtgcataacgcaaaacaggttgccgtgctg
gttccgacaaccctgcttgcccaacaacactttgaaaacttccgtgaccgttttgccaac
ttgccaatccgggtagaggtgctgtcccgcttcaaatctgcaaaagagcaaaaccagatc
cttgcggacgtagaagccgggaaagtggatatcctcatcggtacccacaaactgatccag
ggcaccatcaaatttgctgatcttggtcttctcattgtggatgaagagcaccgctttggt
gtccgccagaaagagaaaatcaaagccatgcgggcagatgtggatatcctgaccctgacc
gcaacacccattccgcgaacactcaatatggcaatgagcggtattcgggatctgtcgatt
atcgcaactccaccttcccgccgcctggcagtaaaaaccttcgttcgagaacgagatgaa
gtgacggtgaaggaagctatcctgcgtgaaatcatgcgtggtggccaagtctacttcctg
cacaatgacgtagagtctattgaaaaagcagcttccgacctggctgaactggtaccggat
gcgcgtattaccgtcgctcatggacaaatgcgcgagcgagagctcgagcgcataatgagt
gacttctaccatcaacggttcaacgtactggtttgtactaccatcattgagaccggtatt
gatgtcccaacggctaacaccatcataatcaaccgtgcagacagtttcggtctggcgcag
ttacaccagttacgaggccgggtaggccgttcacatcaccaggcttatgcctacctgctg
acgccacaccctaagcgcatgtcaaaagatgccgtaaaacgtctggaggctatcgcttcg
ctggaagacctgggtgccggatttacacttgcgacccatgaccttgaaattcgtggagcc
ggtgaactgcttggcgatgaacaaagcggccagatccagaccgtcggcttcacactgtat
atggaaatgcttgagcaggcggtcgaatccttgaaagaaggtaaagagccttctctcgat
gatttgcttaacgagcaaaccgaagtggaactgcgtgtacctgccctgctgccagatgac
tacatgccggatatcaacactcgcctatccctgtacaaaagggttgccagtgcttcaaac
gacgatgaactcgacgagctccgtgtggagttgattgaccgtttcggtttgttgcctgag
ccagccaagaacctgcttaccttggctcggcttaaactgtctgccaccgatctgggcatt
cgcaagctggaacttggaccaatgggcggagccattgaatttaatgaaaatgcaccgatt
gatcccgcttttctggttggtctgttacaatcgagcccacagacttaccgcctggatggc
ccaacccgcctgaaagtggtcgaagcgattaaggaaaacccggatcgcatccggtttgca
caaacgctcattgagcaatttgagaatcataaagtgaccgcggtgcaggcttaa
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