Parasalinivibrio latis: NF212_14965
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Entry
NF212_14965 CDS
T11132
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plas Parasalinivibrio latis
Pathway
plas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NF212_14965 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plas03021
]
NF212_14965 (rpoD)
Transcription machinery [BR:
plas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NF212_14965 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Vfa1
DNA_pol_phi
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WWE58208
LinkDB
All DBs
Position
1:3319936..3321786
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AA seq
616 aa
AA seq
DB search
MDQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSEQIEDIIQMINDMGIQVVETAP
DADDLIMSETVTDEDAAEAAAAALSTVDSELGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQLAVAEYPESISYLLDQFDKVEAEELRLTDIISGFVDPSQEEDLAPTATH
IGSELSESDLADEDEDEDDEDEDSDEDDSEDDNAIDPEVAREKVSELRRSYEAVLASTQQ
KGREDDSTKEAITELAEVFKQFRLIPKQFDRLVDEMRQTMDKVRTQERLIMRLCIDTGRM
PKKNFVQVFAGNEASDTWLDAVLAAGKPYSDRIKENEEDLRRCIQKLKLLEEETGLSVER
IKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPMDSATM
QNLKFATNEVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacaacttaagttactcgttgccaaaggtaaggagcaaggc
tacctgacctatgccgaggtaaacgaccaccttccggaagacatcgtcgattccgaacag
attgaagacatcattcagatgatcaacgacatgggtatccaggtggtggaaacagccccg
gatgccgatgacttgatcatgtctgagactgtcaccgatgaagacgcagcggaagctgcg
gctgcagcactttccaccgttgacagcgaactgggccgtacaaccgacccggtacgtatg
tacatgcgtgaaatgggtaccgttgaactgctgacccgtgaaggcgaaatcgacatcgcc
aagcgtatcgaagacggtattaaccaggtacagctggcggttgccgaataccctgagtct
atctcttatctgttggaccagttcgacaaagtcgaagcggaagaactgcgtcttactgac
atcatttcagggttcgttgacccttctcaggaagaagatctggccccaacagcaacccac
atcggttcagagttaagcgagagcgatcttgctgacgaagacgaagatgaggacgatgaa
gacgaagacagtgacgaggacgatagcgaagacgacaacgccatcgatcctgaagtcgcc
cgtgaaaaagtctctgaactgcgccgcagctacgaagccgtgctggcatcaacccagcaa
aaaggccgcgaagatgacagcaccaaagaagccatcactgagctggctgaggtgttcaag
cagttccgtctgatccctaagcagtttgaccgcctggttgacgaaatgcgtcagaccatg
gataaagttcgtacccaggagcgcctgatcatgcgcctgtgtattgacaccggtcgtatg
ccaaagaaaaacttcgtgcaggtatttgccggcaacgaagcgtctgacacctggctggat
gctgtactggcagccggtaagccatactcagaccgtatcaaagaaaatgaagaagacctg
cgtcgctgcatccagaagctgaagctgctggaagaagagaccggcctgtctgttgagcgt
atcaaagacatcagccgccgcatgtctatcggtgaagcgaaagcccgccgcgccaagaaa
gagatggtagaggcaaacctgcgtctggttatttctatcgcgaagaaatacaccaaccgt
ggtctgcagttcctggacctgatccaggaaggtaacatcggcctgatgaaggcagttgat
aagttcgaataccgccgtggttataagttctcaacttacgccacatggtggattcgccag
gcgatcactcgctctatcgctgaccaggcccgtaccatccgtattccggtacacatgatt
gagaccatcaacaagctcaatcgtatctctcgccaaatgctgcaggaaatgggccgcgag
ccttcccctgaagaactggcagagcgcatgatgatgccggaagacaagattcgtaaggta
ctgaagatcgccaaagagccaatctccatggaaaccccaatcggtgacgatgaagattca
catctgggcgacttcatcgaggatacaaccctcgagctgccaatggactctgcaaccatg
cagaacctgaagtttgcaaccaacgaagttctggctggcctgacaccacgtgaagccaag
gtactgcgtatgcgtttcggtatcgacatgaacactgatcacactcttgaagaggtaggt
aagcagttcgacgttacccgtgagcgtatccgtcagattgaagccaaggccctgcgtaag
cttcgccacccaagccgctcagaaatcctgcgcagcttcctggatgaataa
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