Parasalinivibrio latis: NF212_24785
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Entry
NF212_24785 CDS
T11132
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plas Parasalinivibrio latis
Pathway
plas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF212_24785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plas03019
]
NF212_24785
03009 Ribosome biogenesis [BR:
plas03009
]
NF212_24785
Enzymes [BR:
plas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NF212_24785
Messenger RNA biogenesis [BR:
plas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF212_24785
Ribosome biogenesis [BR:
plas03009
]
Prokaryotic type
rRNA helicases
NF212_24785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WWE61042
LinkDB
All DBs
Position
2:complement(1747016..1748872)
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AA seq
618 aa
AA seq
DB search
MQETTITFSELNLSASILEALNEMGFTNPTPIQAAAIPALLEGQDALGKAQTGTGKTAAF
SLPILNGLNLDETDPQAIVLAPTRELAIQVADEMKRLGAKIPGLRVLEIYGGTSIVDQLR
ALNRGAHVVVGTPGRIKDLITRQRLRLENINTFVLDEADEMLKMGFVDDVTWIMEQAPEN
AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGSNRTVAKVEQKFWVQRGVDKNEAMIRLL
ETEDTDASIVFVRTRQDTEQVSDFLAARGFKSAPLHGDIPQNLRERTVEQLKSGVIDILV
ATDVVARGLDVARVTHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVKTNQMRMLRTI
ERVTQTRMDELKLPLLTEVAARRLDKLADSLVAESDTADLETFVGLINTLSERVEMDSTK
LAALLLKRCQGPRPLVVNGDNDPMLHAKREPRERGDRFDRGDRRRGDRFERGERGDRGER
RPSRKFQNNDMNWNTYQLQVGREHGVQARDVVGAIANELGLEKQFIGAIRINQEVTNVDL
PQDMPGEIFEQLKGIRIRQRPTRARLLGQSERGNEERPRRRFNNGEGRGEGRPARDRGER
SDRGDRGERRRAPRNVNA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaactacgattaccttttccgagctgaacctgtctgcatctatccttgaagca
ctgaatgaaatgggtttcactaacccaacacctattcaggctgctgcaatcccagcactg
ctggaaggtcaggatgcactgggtaaagcgcaaaccggtacaggtaagaccgccgcattc
tcacttccaatccttaatggtttgaacctcgacgagactgaccctcaggcaatcgttctg
gctcctactcgcgaactggcgattcaggtggcagacgaaatgaagcgcctgggtgcgaaa
atccctggtctgcgcgtgctcgaaatttacggtggtacctctatcgttgaccaactgcgt
gcccttaaccgtggcgcacacgttgttgtcggtacccctggacgtatcaaggacctgatt
acccgtcagcgtctgcgtctggaaaacatcaatacattcgttctcgacgaagcagacgaa
atgctcaaaatgggcttcgtagacgacgtaacctggatcatggaacaggctccagaaaac
gctcagcgtgttctgttctctgcaaccatgccacctatcgttaaagaaattgttgaccgc
ttcctgcgtaaccctgctcgcattgacgtggcaggcagcaaccgtactgtagccaaagta
gagcagaagttctgggtgcagcgtggcgttgacaagaacgaagctatgattcgccttctg
gaaacagaagataccgatgcttcaatcgtattcgtacgtacccgtcaggatactgaacag
gtttcagatttcctggcagcccgtggctttaagtctgcacctctgcacggcgatatcccg
cagaacctgcgtgagcgtactgtagaacaacttaagtctggtgttatcgacattctggtt
gcaactgacgttgtagctcgtggtctggacgtagcccgtgtaacccacgtatttaactac
gacattccattcgatgttgagtcttacatccaccgtatcggtcgtaccggccgtgcagga
cgtgaaggtaaagcaatccttctggttaagactaaccaaatgcgtatgctgcgtaccatc
gagcgtgttacccagactcgtatggacgaactgaagctgcctctgctgactgaagttgct
gcccgtcgtctggacaaactggctgactcactggttgccgagagcgatacagctgatctg
gaaacattcgtaggccttatcaacaccctgagcgagcgtgttgaaatggacagcaccaaa
ctggcagctctgctgctgaagcgttgtcagggcccacgtccactggttgtaaacggtgac
aacgatccaatgctgcacgccaagcgtgaaccacgtgaacgtggcgatcgttttgaccgt
ggtgaccgccgtcgtggtgaccgtttcgagcgcggtgagcgtggcgatcgtggcgagcgt
cgtccaagccgtaaattccagaacaatgacatgaactggaacacctaccagctgcaagtt
ggccgtgaacacggtgtacaggctcgtgacgttgttggcgctattgcgaacgaactgggt
ctggagaagcagtttatcggtgctatccgcattaaccaggaagtgaccaatgtcgacctg
ccacaggatatgcctggtgaaattttcgaacagctgaaaggcattcgtatccgccagcgt
cctacacgtgcacgtctgctgggtcagagcgagcgtggtaacgaagagcgtcctcgtcgt
cgtttcaacaacggtgaaggccgtggcgaaggtcgtccagcgcgtgaccgcggcgagcgt
agtgatcgcggagaccgtggtgaacgtcgccgtgctccacgcaacgtgaacgcataa
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