Plantactinospora sp. BB1: C6W10_14625
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Entry
C6W10_14625 CDS
T05391
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plat
Plantactinospora sp. BB1
Pathway
plat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6W10_14625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plat03019
]
C6W10_14625
Messenger RNA biogenesis [BR:
plat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6W10_14625
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AVT37502
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Position
3348780..3350468
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AA seq
562 aa
AA seq
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MSQPGIELELPPPLPEGGLRIVPLGGLGAIGRNMTVFEYDGKLLIVDCGVLFPDVEQPGV
DLILPDFAPILDRLADVQAIVLTHGHEDHIGAVPYLLAHKPDIPLVGSQFTLALVEAKLA
ERRIEPYTLTVREGGRERLGPFECEFFAVNHSIPDALAVAIRTPAGLVLHTGDFKMDQLP
LDGRITDLAGFARLGAEGVDLLLSDSTNAEIPGFVSSEREIGPVLDSIFAKARGRIIVAS
FASHVHRVQQVLDSAAEHGRKVAFIGRSMVRNMGIARDLGLLRIEPGLVVGLDEAAALPP
DQIVLMSTGSQGEPMSALGRMATGDHRHITVAPGDTVVLASSLVPGNETSVYRVINRLCR
AGATVIHKDVAKVHVSGHAPAGELLYLLNVVRPSNLMPVHGEWRHLRAHARLGIESGVAA
DRVVLCEDGDVVDLVEGHARVVGHVKSRYVYVDGLAVGDVGESLLTERRILGDGGFISAT
VVVDSVTGKVVGGPTVSAKGFSDDPDAFNPVIPLITEALGRAATEGITDPHQLQQIVRRT
VGRWVNDAYRRRPMIVPTVVEV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccggggattgagctggaactgccgccgccgctgcccgagggcgggctgcgg
atcgtgccgctgggcggcctcggcgccatcgggcggaacatgaccgtcttcgagtacgac
ggcaagctgctgatcgtcgactgcggggtgctcttccccgacgtcgaacagcctggtgtc
gacctgatcctgcctgacttcgcgccgatcctggaccggctcgcggacgtacaggcgatc
gtgctcacgcacgggcacgaggaccacatcggcgccgtgccctacctgctcgcgcacaag
ccggacatcccgctggtcggttcgcagttcaccctcgcgctggtcgaggcgaagctggcc
gagcggcggatcgagccgtacacgctgacggtccgggaggggggtcgggagcggctcggc
ccgttcgagtgcgagttcttcgcggtcaaccactcgatcccggacgccctcgcggtggcg
atccggaccccggccgggctggtgctgcacaccggcgacttcaagatggaccagctcccg
ctggacggccggatcaccgacctggccggcttcgcccggctcggtgcggaaggcgtcgac
ctgctcctctccgactcgaccaacgccgagatccctggcttcgtcagctcggagcgggag
atcgggccggtactcgactcgatcttcgccaaggcgcgcggccggatcatcgtggcctcg
ttcgcctcgcacgtgcaccgggtgcagcaggtgctggactccgccgccgagcacggccgc
aaggtcgccttcatcggccggtcgatggtccgcaacatgggcatcgcccgcgacctgggg
ctgctgcgcatcgagcccggcctggtcgtcgggctggacgaggcggccgcgctgccgccg
gaccagatcgtgctgatgtcgaccgggtcgcagggcgagccgatgagcgcgctgggccgg
atggccaccggcgaccaccggcacatcacggtcgctcccggcgacacggtggtgctggcc
agctcgctggtgccggggaacgagacctcggtctaccgggtgatcaacaggctctgccgg
gccggtgccaccgtgatccacaaggacgtggcgaaggtgcacgtctccgggcacgccccg
gccggcgaactgctctacctgctcaacgtggtccggccgagcaacctgatgccggtgcac
ggcgagtggcggcacctgcgcgcgcacgcccggctcggcatcgagtccggggtcgccgcc
gaccgggtggtgctctgcgaggacggcgacgtcgtggacctggtcgaggggcacgcccgg
gtggtcgggcacgtcaagagccggtacgtctacgtcgacggtctcgccgtcggtgacgtc
ggcgagtcgctcctcaccgagcggcggatcctcggcgacggcggcttcatctcggcgacc
gtggtggtcgactcggtcaccggcaaggtggtcggcggtcccaccgtctccgccaagggc
ttctcggacgacccggacgcgttcaacccggtcattccgttgatcaccgaggcgctcggc
cgggcggccaccgaggggatcaccgatccgcaccagttgcagcagatcgtccggcgtacg
gtcggccgctgggtgaacgacgcgtaccggcgccgcccgatgatcgtccccaccgtggtc
gaggtctga
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