Plantactinospora sp. BB1: C6W10_23210
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Entry
C6W10_23210 CDS
T05391
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plat
Plantactinospora sp. BB1
Pathway
plat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6W10_23210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plat03021
]
C6W10_23210
03019 Messenger RNA biogenesis [BR:
plat03019
]
C6W10_23210
Transcription machinery [BR:
plat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C6W10_23210
Messenger RNA biogenesis [BR:
plat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C6W10_23210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
VWA_2
NACHT
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AVT38863
UniProt:
A0A2R4FMW7
LinkDB
All DBs
Position
complement(5330855..5332876)
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AA seq
673 aa
AA seq
DB search
MSDTTDVTSDVSNVAGEATTGATRRRRTGTGLSAMLLPELQSLAASLGISGTARMRKGEL
IAAISERQAGATNSTGGGAPRPRAEVSAAAAPAREEVRAEVRDSADRPDGERRAAEQVPA
AAGGEGRTRTSRRSSRTAAATAEVETAAPTERNERNERPERAERGDRAERAERGDRAERA
ERGDRAERTDGAERTDGGERGDRADRGESRNGRDRNERGDRGERGESRNDRGQRSADRDR
STDRDRDRDRDSDGDDDGEGGGRRSRRSRFRDRRRGRGERAENGESGGGREPQVNEDDVL
VPVAGIIDVLDNYAFVRTTGYLSGPNDVYVSMSQVKKYGLRRGDAVTGAVRAARDGEQRR
DKYNPLVRLDTINGMDPDEAKRRPEFYKLTPLYPQERLRLETEPHILTTRVIDLVTPIGK
GQRALIMSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVVAA
TFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGID
STALYPPKRFLGAARNIENGGSLTILATALVETGSVMDTVIFEEFKGTGNAELKLDRKIA
DKRVFPAIDIHTSGTRKEEILLAPEELAITHKLRKVLHSLDSQAALDLLLDRLKQSRTNI
EFLMQIAKSTPGE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgacgtgacgtcggatgtttccaacgtcgctggcgaagccaccacc
ggcgccacccgtcgtcggcggaccggcaccgggctgtcggcgatgctgctgccagagttg
cagagcctggccgcgtcgctcggcatctccggtacggcccggatgcgcaagggcgagctg
atcgccgccatctcggaacggcaggctggtgccaccaacagcacgggcggcggcgcgccg
cgcccgcgtgccgaggtgtcggccgctgccgcgccggctcgcgaagaggtccgggccgag
gtgcgggacagcgccgaccggccggacggtgagcgtcgggccgccgagcaggtgcccgcc
gccgctggcggcgagggtcggacccggacgtcccgccggtccagccggaccgctgccgcc
accgccgaggtggagaccgcggcgccgacggagcgcaacgagcggaacgagcgtccggag
cgggccgagcgcggtgaccgcgcggagcgggccgagcgcggtgaccgcgcggagcgggcc
gagcgcggtgaccgcgcggagcggaccgacggtgccgagcggaccgacggtggcgagcgc
ggcgaccgcgcggaccggggcgagtcgcgcaacggccgggaccgcaacgagcggggtgac
cggggcgagcgtggcgagtcgcgcaacgaccgtggacagcgttcggcggaccgggaccgt
tcgacggaccgggacagggatcgggaccgggacagcgacggcgacgacgacggcgagggc
ggcggccggcgcagccggcggagccgcttccgcgaccggcgtcggggccggggcgagcgg
gcggagaacggcgagagcggcggcggccgggagcctcaggtcaacgaggacgacgtcctc
gtaccggtggccggcatcatcgacgtgctcgacaactacgccttcgtccggaccaccggc
tacctctccggcccgaacgacgtctacgtgtcgatgtcccaggtcaagaagtacggcctg
cgccgcggtgacgcggtcaccggtgcggtacgcgcggcccgggacggcgagcagcggcgg
gacaagtacaacccgctggtccggctcgacaccatcaacgggatggacccggacgaggcg
aagcggcgtcccgagttctacaagttgaccccgctctacccgcaggagcggctccggttg
gagaccgagccgcacatcctgaccacccgggtcatcgacctggtgacgccgatcggcaag
ggtcagcgggcgctcatcatgtcgccgccgaaggccggtaagaccatggtgttgcaggcg
atcgccaacgcgatcacccacaacaaccccgagtgccacctgatggtcgtgctcgtcgac
gagcggcccgaagaggtcaccgacatgcagcgctcggtcaagggcgaggttgtcgcggcc
accttcgaccgtccgccgcaggaccacaccacggtcgccgagctggcgatcgagcgggcc
aagcgcctggtcgagctgggccacgacgtggtcgtactgctcgactcggtgacccggctc
ggccggtcgtacaacctggcggcgccggccagtggtcggatcatgtccggtggtatcgac
tccaccgcgctctacccgccgaagcggttcctgggcgcggcgcggaacatcgagaacggc
ggttcgctgaccatcctcgccaccgcgctggtggagaccgggtccgtgatggacacggtc
atcttcgaggagttcaagggcaccggtaacgcggagctgaagctggaccggaagatcgcc
gacaagcgggtcttcccggccatcgacatccacacctccggcacccgtaaggaggagatc
ctgctggccccggaggagttggccatcacgcacaagctgcgcaaggtgctgcactcgctc
gactcgcaggccgcgctggacctcctgctggaccggctcaagcagtcccggaccaacatc
gagttcctgatgcagatcgcgaagtcgacgccgggggagtaa
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