Plantactinospora sp. BB1: C6W10_24715
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Entry
C6W10_24715 CDS
T05391
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plat
Plantactinospora sp. BB1
Pathway
plat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6W10_24715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plat03021
]
C6W10_24715
03400 DNA repair and recombination proteins [BR:
plat03400
]
C6W10_24715
Enzymes [BR:
plat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6W10_24715
Transcription machinery [BR:
plat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6W10_24715
DNA repair and recombination proteins [BR:
plat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6W10_24715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AVT39109
LinkDB
All DBs
Position
complement(5665065..5668496)
Genome browser
AA seq
1143 aa
AA seq
DB search
MAASRPAKTSRTSSAFAPRRISFGRITEHLEVPNLLAIQNESFDWLVGNEAWQGRSADDP
HARSGLAEILDEISPIEDFSGTMSLSFSAPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFIINGTERVVVSQLVRSPGVYFDKQPDKTSDRDLS
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWTNEQIRERFGWSELMMT
TLEKDHIAGVDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
ELDVPINTGTLTEDDIVATVEYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFGRVNPFGFI
ETPYRKVVEGRVTDQIDYLTADEEDRFVKAQANTALRADGTFAEDRVLVRRKGGEVDYVA
PTAVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAEAPLVGTGMEY
RAAVDAGDVVVAEVGGVVEDLCADYVTVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDDGEMALGRNLLVAFMPWEGHNYEDAIILSQRLVQQDALTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVTGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWVAKTGWQVQGDDADWKRALRSIDAHESEPDTNVATPVFDGAKEEEISGLLSSTL
PNRDGKQLIGASGKAQLFDGRSGEPLPDPIAVGYIYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRREPSSV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagtcgtacgtcgagcgctttcgcgccccgccga
atctccttcggcaggattaccgaacacctcgaggtccccaacctcctcgccatccagaac
gagtcgtttgactggctggtcggcaacgaggcttggcagggccggtcggccgacgacccg
cacgctcgatcgggtctcgccgagatcctcgacgagatcagtcccattgaggacttttct
ggcactatgtcgctctccttctccgcgccgcgcttcgacgaggtcaaggcctcgatcgag
gagtgcaaggagaaggacctgacctactgcgccccgctgttcgtgaccgcggagttcacc
aacaacaccaccggcgagatcaagagccagacggtgttcatgggtgacttcccgatgatg
acgccgaagggcaccttcatcatcaacggcaccgagcgcgtggtggtcagccagctcgtc
cggtccccgggcgtctacttcgacaagcagccggacaagacctccgaccgcgatctctcc
agcgtcaaggtcatcccgagccggggtgcctggctggagttcgacatcgacaagcgcgac
accgtgggtgtccgcatcgaccgtaagcgccggcaggccgtcaccgtcctgctcaaggcg
atcggctggaccaacgagcagatccgtgagcggttcggctggtccgagctgatgatgacc
accctggagaaggaccacatcgccggggtggacgaggcgctgctcgacatctaccgcaag
ctccggccgggcgagcccccgacgcgggagaacgcccagaccctgctcgacaacctcttc
ttcaacccgaagcggtatgacgtcgccaaggtcggccgatacaagttcaacaagaagctc
gagctggacgtgccgatcaacaccggcacgctgaccgaggacgacatcgtcgccaccgtg
gaatacctctgccggctgcacgccggtgaggagggctacgaggccgacgacatcgaccac
ttcggcaaccgccggctccgtacggtgggcgagctgatccagaaccaggttcgggtcggc
ctctcccggatggagcgggtggtccgcgagcggatgaccacccaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttcggc
acctcgcagctgtcccagttcatggaccagaccaacccgctggcgggcctgacccaccgg
cgccggctgagcgcgctcggcccgggtggtctgtcccgggagcgggccggcttcgaggtc
cgggacgtgcacccgtcgcactacggccggatgtgcccgatcgagacgccggaaggcccg
aacatcggcctgatcggcgccctgtcgaccttcggccgggtcaacccgttcggcttcatc
gagacgccgtaccggaaggtcgtcgagggccgggtcaccgaccagatcgactacctgacc
gccgacgaggaggaccggttcgtcaaggcgcaggccaacaccgcgctgcgcgcggacggc
accttcgccgaggaccgggtcctggtccgccggaagggcggtgaggtcgactacgtcgca
cccaccgcggtcgactacatggacgtgtcgccgcgccagatggtgtcggtcgccaccgcc
atgatcccgttcctcgagcacgacgacgccaaccgggcactgatgggcgcgaacatgcag
cgccaggcggtgccgctggtcaaggccgaggcgccgctggtcggcaccggcatggaatac
cgggccgcggtcgacgccggtgacgtggtcgtcgccgaggtcggcggcgtggtcgaggac
ctctgcgccgactacgtgacggtgcaccaggacgacggccaccggcgtacctacctcctg
cacaagttccgtcgctccaacgcgggctcctgcgtcaaccagaagccggtcgtcttcgag
ggcgatcgggtcgaggcgggccaggtcatcgcggacggtccgtgcaccgacgacggcgag
atggcgctcggccgcaacctgctggtcgcgttcatgccgtgggagggccacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtccagcaggacgccctcacctcgatccacatc
gaggagcacgaggtggacgcccgggacaccaagctcggtccggaggagatcacccgcgac
atcccgaacgtcagcgaggaaatgctcgccgacctcgacgagcgcggcatcatccggatc
ggcgccgaggtcgtcaccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
gagctgaccccggaggagcggctgctccgcgcgatcttcggcgagaaggcgcgcgaggtc
cgggacacctcgctgaaggtgccgcacggcgagaccggcacggtcatcggcgtacggacg
ttcagccgggaggacggcgacgagctgccgccgggcgtcaacgagctggtccgggtctac
gtggcgcagaagcggaagatccaggacggtgacaagctcgccggccggcacggcaacaag
ggcgtcatctcgaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccg
gtcgacatcgtgctcaacccgctcggcgtgccgagccggatgaacatcggccaggtgctg
gagacccacctcgggtgggtcgccaagaccggctggcaggtgcagggtgacgacgccgac
tggaagcgggcgctgcgttcgatcgacgcgcacgagtccgagccggacaccaacgtggcg
acgccggtcttcgacggcgccaaggaggaggagatctccggtctgctctcgtcgaccctg
cccaaccgggacggcaagcagctgatcggcgcgagcggcaaggcgcagctcttcgacgga
cgttccggcgagccgctgcccgacccgatcgcggtcggctacatctacatcctcaagctg
aaccacctggtcgacgacaagatccacgctcggtcgaccggcccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggccagcggttcggcgagatggagtgc
tgggcgatgcaggcgtacggcgccgcgtacgcgctccaggagctgctgacgatcaagtcc
gacgacgtcctcggccgggtcaaggtctacgaggcgatcgtcaagggcgagaacatcccc
gaaccgggcatcccggagtccttcaaggtgctgctcaaggagctgcagtcgctgtgcctc
aatgttgaggtgctctccagcgacggcgtggccctggagatgcgcgagaccgacgacgag
gtcttccgcgctgcggaggagctcggcatcgacctgtcccggcgtgagccgagctcggtc
gaagaggtgtag
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