Plantactinospora sp. BB1: C6W10_25250
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Entry
C6W10_25250 CDS
T05391
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plat
Plantactinospora sp. BB1
Pathway
plat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6W10_25250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plat03019
]
C6W10_25250
03400 DNA repair and recombination proteins [BR:
plat03400
]
C6W10_25250
Enzymes [BR:
plat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6W10_25250
Messenger RNA biogenesis [BR:
plat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6W10_25250
DNA repair and recombination proteins [BR:
plat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C6W10_25250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AVT39199
UniProt:
A0A2R4FNW4
LinkDB
All DBs
Position
complement(5767087..5769306)
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AA seq
739 aa
AA seq
DB search
MDGNPTPDEDERTGAEPADRGPAGVVRERAEAVLRRLAGEHARLREDQWRAIEALVVGRR
RVLCVQRTGWGKSAVYFVATALLRQSAEGASTSTDARQGAGPAGPTVIVSPLLALMRNQV
EAAARAGIRARTINSANLDEWDEIVAEIGSGTVDVLLISPERLNNPDFRDAVLPRLAATT
GLLVVDEAHCVSDWGHDFRPDYRRLRTFLAGLPAGTPVLATTATANSRVTDDVAEQLGDA
LVLRGPLDRESLRLGVLELPSPAHRLGWLADQLDRLPGSGIIYTLTVAAAGETAEFLRGR
GYAVASYTGQADDADRRAAEQDLLDNKIKALVATSALGMGFDKPDLGFVVHLGAPPSPIA
YYQQVGRAGRAVGAAEVLLLPGAEDQAIWRYFASLAFPPEEQVRAVLAALHPDRPLSTPA
LEPIVDLRRTRLELMLKVLDVDGAVRRVRGGWLATGEPWHYDAARLHRVAQARTAEQQAM
REYTATAGCRMEFLRRCLDDPAATACGRCDRCTGARFDAEVSAPALAAAQAFLGRPGVEI
PAKKLWPTGLEAVGVALRGRIGPAEQAYPGRAVGRLSDLGWGGRLRALTGPEASDGELPE
DVATAVVEVLKAWAHGDDPWPARPVAVVAVGSRRRPRLVHGLADRIARVGRLPLLGEVPP
RDGAAAGAGPRGNSAQRVRALHDAFELPEPLVGALAGLTGPVLLVDDLVDSGWTMTVVAR
LLRQAGAPGVLPFALAVAG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggacggaaacccgacgccggacgaggacgagcggaccggcgcggagccggcggaccga
gggccggccggcgtcgtacgcgagcgggccgaggccgtactgcgtcggttggccggtgag
cacgcccggctccgcgaggaccagtggcgggccatcgaggcgctggtggtggggcggcgc
cgggtgctctgcgtgcagcggaccggttggggcaagtcggccgtctacttcgtcgcgacc
gcgctgctccggcagtccgccgagggcgcgtcgacgtcgacggacgcgcgtcagggagcc
gggccggccgggccgacggtgatcgtctcgccgctgctggcgctgatgcgcaaccaggtg
gaggcggcggcccgggccgggatccgggcccggaccatcaactcggccaacctcgacgag
tgggacgagatcgtcgccgagatcgggtccggcacggtcgacgtactgctgatcagcccg
gagcggctgaacaaccccgacttccgggacgccgtactgccccggctcgccgccaccacc
gggctgctggtggtggacgaggcgcactgcgtctccgactgggggcacgacttccgcccc
gactaccggcggctgcgtaccttcctggccgggttgccggccggtacgccggtactggcc
accaccgccaccgcgaacagccgggtcaccgacgacgtggccgagcagctcggcgacgca
ctggtgctgcgcgggccgctggaccgcgagtcgctgcggctgggcgtgctggagctgccg
agcccggcgcaccggctcggctggctggccgaccagctcgaccggctgcccggctcgggg
atcatctacaccctgaccgtggcggcggccggcgagaccgccgagttcctgcgcggccgg
ggctacgccgtggcgtcgtacaccggtcaggcggacgacgccgaccggcgcgccgccgag
caggacctgctggacaacaagatcaaggccctggtcgccacctcggcgctcggcatgggc
ttcgacaagccggacctgggtttcgtggtgcatctcggtgcgccgccgtcgccgatcgcc
tactaccagcaggtcggccgggccggccgggccgtcggggcggccgaggtgttgctgctg
cccggtgccgaggaccaggcgatctggcgctacttcgcctcgctggccttcccgccggag
gagcaggtccgggccgtcctcgccgccctgcacccggaccgtccgctctccacaccggcg
ctggagccgatcgtcgacctgcgccggacccggctggagctgatgctcaaggtgctcgac
gtggacggcgcggtacgccgggtccggggcggctggctggccaccggcgagccgtggcac
tacgacgcggcccggctgcaccgggtggcgcaggcgcgtaccgccgagcagcaggccatg
cgggaatacaccgcgaccgccggctgccggatggagttcctccgccgctgcctggacgat
ccggcggcgaccgcgtgcgggcgctgcgaccgctgcaccggggcccgcttcgacgccgag
gtgtcggcaccggcgctcgccgccgcgcaggcgttcctcggccgccccggggtggagatc
ccggcgaagaagctctggccgaccgggctggaggcggtcggggtcgcgctgcgcggcagg
atcgggccggccgagcaggcgtacccggggcgggccgtcgggcggctctccgacctcggc
tggggtggccggctgcgcgcgttgaccgggccggaggcgtcggacggcgagctgccggag
gacgtggcgaccgcggtggtcgaggtgttgaaggcgtgggcgcacggcgacgatccgtgg
ccggcccgcccggtcgccgtggtcgcggtcggttcgcggcgccggccccggctggtgcac
gggctggccgaccggatcgcccgggtgggccggctgccgctgctcggcgaggtgccgccc
cgggacggcgcggcggccggcgccgggccgcgcggcaacagcgcccagcgggtacgcgcg
ctgcacgacgccttcgagttgccggaaccgctggtcggggcgttggccgggctgaccggt
ccggtgctgctggtcgacgacctcgtcgactccggctggaccatgacggtcgtcgcccgg
ctgctgcgtcaggccggtgccccgggggtgctcccgttcgccctcgccgtcgccggctga
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