Plantactinospora sp. BB1: C6W10_28870
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Entry
C6W10_28870 CDS
T05391
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plat
Plantactinospora sp. BB1
Brite
KEGG Orthology (KO) [BR:
plat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plat03032
]
C6W10_28870 (topA)
03400 DNA repair and recombination proteins [BR:
plat03400
]
C6W10_28870 (topA)
Enzymes [BR:
plat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C6W10_28870 (topA)
DNA replication proteins [BR:
plat03032
]
Prokaryotic type
DNA Topoisomerases
C6W10_28870 (topA)
DNA repair and recombination proteins [BR:
plat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C6W10_28870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
MarR_2
Toprim_2
DUF4604
Motif
Other DBs
NCBI-ProteinID:
AVT39798
UniProt:
A0A2R4FQJ1
LinkDB
All DBs
Position
6623666..6626557
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AA seq
963 aa
AA seq
DB search
MPSNARSTRLVIVESPAKAKTISGYLGPGYVVEASLGHVRDLPRNADDVPAKYKGESWAR
LGVDVDNGFAALYVVSPDRRQQISKLTRLAKEVDEVFLATDEDREGEAIAWHLVETLKPK
VPVKRMVFHEITRQAIQAAVANPREIDRDLVDAQEARRILDRLYGYEVSPVLWRKVRSGL
SAGRVQSVATRIVVERERQRMAFRSAEYWDILATLAVQGAADGPRTFSATLVALNGDRIA
TGKDFEPTTGQVKPGAGVMHLDEAGARGLAARLDGRPFTVTRVDEKPYRRRPYAPFITST
LQQEAARKLRFSSQQTMRTAQRLYENGYITYMRTDSVNLSETAIAAARRQIAELYGERNV
PPEPRRYTGKVKNAQEAHEAIRPAGDNFRTPGELANELSGEEFRLYELIWRRTIASQMTD
AVGSSVSVRIRAVSGAGEEADFGATGKTITEPGFLRAYVESSDDENAEAEDAERRLPNLV
KDQPLTAEELAATGHHTQPPSRYTEASLVKSLEELGIGRPSTYASIMATIQDRGYVFKRG
QALIPSFLAFAVVGLLERHYPRLVDYNFTAAMENELDEIAGGDHAAVDFLTSFYFGSPDG
GDQSVARSGGLKKMVTENLSEIDARSVNSIPLFRDDEGRDVVVRVGRYGPYLQRSLPGAE
PAAQAPRDTGDGGPPEDTSPAGDRAPIPEGVAPDELTPEKVHELFLGGGGERKLGEHPET
GEPIVLKSGRFGPYVASGERKASLLRSQSPESLTMTEALRLLTLPRVVGTAPDGAEVLAA
NGRYGPYVKRGDEYRSLESEEQLFTVTLEEALALLAAPKTRQRRAAAPPLREMGADPLTE
KPLVIKDGRFGPYVTDGETNASLRRGQTPEALTLEEASEMLAEKRAKGPAPRKRAAKKAT
AKKTAAKATGGETAAKKTAGKKTAAKKTTAAKKTTAAKATAAKKTAAKKAAPRKATATAD
PTD
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcaacgccaggagcacccgtctggtcatcgtcgagtcaccggcgaaggccaag
acgatctcgggctatctcggcccgggatacgtcgtcgaggccagcctgggtcacgtccgt
gacctgccgcgcaacgccgacgacgtgcccgccaaatacaagggcgagtcgtgggcccgg
ctcggcgtggacgtcgacaacggcttcgccgccctctacgtcgtgtccccggaccgcagg
cagcagatcagcaagttgacccggctggccaaggaggtggacgaggtcttcctcgccacc
gacgaggaccgcgagggcgaggcgatcgcctggcacctggtcgagacgctcaagcccaag
gtgccggtcaagcggatggtcttccacgagatcacccggcaggccatccaggcggcggtg
gccaacccgcgcgagatcgaccgcgacctggtcgacgcgcaggaggcccggcggatcctg
gaccggctctacggctacgaggtctccccggtgctctggcggaaggtccgctccgggctc
tccgccggccgggtccagtcggtcgccacccggatcgtcgtcgagcgcgagcggcagcgg
atggcgttccgcagcgccgaatactgggacatcctcgccaccctcgctgtgcagggcgcc
gccgacgggccgcgcaccttctccgccaccctggtcgcgctgaacggggaccggatcgcc
accggcaaggacttcgagccgaccaccggccaggtgaagccgggcgccggggtgatgcac
ctcgacgaggcgggtgcccgtggcctggccgcccgcctcgacgggcggcctttcacggtc
acccgggtcgacgagaagccctaccggcgccgcccgtacgcgccgttcatcacctcgacc
ctgcaacaggaggcggcccggaagctgcgcttctcctcgcagcagacgatgcgcaccgcc
cagcggctgtacgagaacggctacatcacctatatgcgtaccgactcggtgaacctgtcg
gagacggccatcgcggccgcccggcggcagatcgccgagctgtacggcgagcggaacgtg
ccgccggagccccgccggtacaccggcaaggtcaagaacgcccaggaggcgcacgaggcg
atccgccccgccggggacaacttccgcacccccggtgagctggcgaacgagctttccggc
gaggagttccggctctacgagctgatctggcggcggaccatcgcgtcccagatgaccgac
gcggtcggctccagcgtctcggtgcggatccgggcggtctccggcgcgggcgaggaggcc
gacttcggcgcgaccggcaagaccatcaccgagccgggcttcctgcgggcgtacgtggag
tcgtccgacgacgagaacgccgaggccgaggatgccgagcggcggctgccgaacctggtc
aaggaccagccgctgaccgccgaggaactggccgcgaccggacaccacacccaaccgccg
tcccgctacaccgaagcgtcgctggtcaagtcgctggaggagctgggcatcggccgcccc
tccacgtacgcctcgatcatggcgacgatccaggaccgggggtacgtcttcaagcgcggt
caggcgctgatcccgtccttcctcgccttcgccgtggtcggcctgctggagcggcactac
ccgcgactcgtcgactacaacttcaccgccgcgatggagaacgagctggacgagatcgcc
ggtggtgaccacgcggcggtggacttcctgacctcgttctacttcggcagcccggacggc
ggggaccagtcggtcgcccggtccggcgggctgaagaagatggtcaccgagaacctgagc
gagatcgacgcgcgcagcgtcaactcgatcccgctcttccgggacgacgaggggcgcgac
gtcgtggtccgggtcggccgctacggcccgtacctgcaacgcagcctgcccggcgcggag
ccggcggcccaggcgccccgggacaccggcgacggcggcccgcccgaggacacgtccccg
gccggcgaccgggcaccgatcccggagggggtggccccggacgagctgaccccggagaag
gtgcacgagctcttcctcggcggtggcggcgagcgcaagctcggcgagcacccggagacc
ggtgagccgatcgtgctcaagtccggccggttcggcccgtacgtggccagtggcgagcgc
aaggcgtcgctgctgcgctcccagtcgccggagtcgttgacgatgacggaggcgctgcga
ctgctcaccctgccccgggtggtcgggacggctccggacggtgccgaggtgctcgccgcg
aacggccggtacggcccgtacgtgaagcgtggcgacgaataccgttcgctggagtcggag
gagcagctcttcacggtcaccctggaggaggctctcgccctgctggcggcgccgaagacc
cggcagcgccgggcggcggccccgccgctgcgggagatgggtgcggatccgctgaccgag
aagccgctggtgatcaaggacggccggttcgggccgtacgtcaccgacggcgagaccaac
gcgtcgctgcggcgcggccagactccggaggcgctgaccctggaggaggcgtcggagatg
ctggccgagaagcgggccaagggtccggcaccgcgcaagcgggcggcgaagaaggcgacc
gcgaagaagacggcggcgaaggccaccggcggcgagacggccgcgaagaagacggcaggc
aagaagaccgccgcgaagaagaccaccgccgcgaagaagacaacggccgcgaaggcgacg
gcggcgaagaagaccgccgcgaagaaggccgccccgcgcaaggccaccgccaccgccgac
ccgaccgactga
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