Pseudomonas lalucatii: I0D68_12150
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Entry
I0D68_12150 CDS
T10193
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plau Pseudomonas lalucatii
Pathway
plau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I0D68_12150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plau03021
]
I0D68_12150 (rpoC)
03400 DNA repair and recombination proteins [BR:
plau03400
]
I0D68_12150 (rpoC)
Enzymes [BR:
plau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I0D68_12150 (rpoC)
Transcription machinery [BR:
plau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I0D68_12150 (rpoC)
DNA repair and recombination proteins [BR:
plau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I0D68_12150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF3150
gerPA
Motif
Other DBs
NCBI-ProteinID:
QVM86588
LinkDB
All DBs
Position
2561498..2565697
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPCAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKEKDGSITKNTRIVDTTVGRALLFQIVPAGMPYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMGNLSKEKVIDRDGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDEVIVPAGTLVDEQWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERLDGALVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVEPGAIVAKW
DPHTHPIVTEMMGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPASGKDIRPAVKL
VDASGKELLLPGTDVPAQYFLPANALVGVADGGQVNVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQVELTHVLEENERLSGDDRFIAKFDRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgatggtctgttctgcgccaag
atctttggcccggtaaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtggcgctggccaaggttcgccgtgag
cgcatggcgcacatcgagctggcctcgccttgcgcccacatctggttcctcaagtcgctg
ccgagccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccttggagaagggccagctgctg
aacgacgagcagtacttcgaggccctcgaggagttcggtgacgatttcgacgcgcgcatg
ggcgccgaagccgtgcgcgaactgctgcacgccatcgatctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaacctgccggagtggatgatcctcacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgggtgatcaaccgcaacaaccgcctcaag
cgcctgctcgacctctccgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggccgcgccatcaccggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaagggtaagcagggtcgcttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggccctggagctgttcaagccgttc
attttcggcaagctggaaatgcgcggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaagtctgggacgtgctcgccgaggtgatccgcgaacacccc
gtactgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccagtg
ctcatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctctcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtcctgggcctgtactacatgacccgcgaggcgatcaacgcc
aagggcgaaggccgcgtgttcgccgacctgcaggaagtcgaccgggtgttccgcgccggc
gaggcctcgctgcacgcccgcgtcaaggtgcggatcaacgagaccatcaaggaaaaggac
ggctcgatcaccaagaacacccgcattgtcgacaccaccgtcggccgcgcgctgctgttc
cagatcgttccggccggcatgccttacgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgttggcttgaaggacaccgtgatcttc
gccgaccagttgatgtacaccggtttcgcctactcgaccatctccggcgtgtcgatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcggatcatcgatgccgccaccgaggaa
gtgaaggagatcgagagccagtacgcctccggcctggtgacccagggcgagaagtacaac
aaggtgatcgacctgtggtccaaggccaacgacgaagtgtccaaggcgatgatgggcaac
ctctcgaaggagaaggtcatcgatcgcgacggcaacgaagtcgatcaggagtccttcaac
tccatgtacatgatggccgactccggtgcgcggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggtctgagcgttctgcagtacttcatctcgacccacggtgcgcgt
aagggtctggcggataccgcgttgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacctggtggtgaccgaggtcgactgcggcaccgagcagggcctg
ctgatgacgccgcacatcgagggtggcgacgtggtcgagcccctgggcgagcgcgtgctg
ggccgagtcatcgcccgcgacgtgttcaagccgggcaccgacgaagtcatagtgccggcc
ggcaccctggtcgacgagcagtgggtcgaattcatcgagctgaacagcatcgacgaagtg
atcgtgcgctcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgatctggcccgcggtcaccaggtgaacatcggtgaagcggtcggcgtcatcgccgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctccgcggccgacagcgtccaggtgaagaacggcggtgccatccgtctg
cacaacctcaagcacgtcgagcgcctggacggcgccctggtcgcggtttcgcgttccggc
gagctggcggtggccgacgagttcggtcgcgagcgcgagcgctacaagctgccgtacggt
gcggtgatttcggtcaaggaaggcgacaaggtcgagccgggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgagatgatgggtaccgtgaccttcgtcggcatg
gaagaaggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaatatcgaa
gtactggatccgaaggaccgtccggcttccggcaaggacatccgtccggcggtcaagctg
gtcgacgcctccggcaaggagctgctgctgccgggtaccgacgtgccggcgcagtacttc
ctgccggccaacgccctggtcggcgtggcggacggtggtcaggtcaacgtgggtgacgtc
atcgcgcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gtagccgacctgttcgaggcgcgccggccgaaagagccgtcgatcctcgcggagatcagc
ggcaccatctccttcggcaaggaaaccaagggcaagcgccgtctggtgatcacgccgacc
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctcaacgtcttcgaa
ggcgaacaggtgaacaagggcgaggtcatttccgacggcccgagcaacccgcacgacatc
ctgcgtctgctcggcgtcagtgccctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcggcagatg
ctgcgcaaggtcgaagtgtccgagtcgggcgactccagcttcatcaagggcgatcaggtc
gagctgacccatgtgctggaagagaacgaacgcctgtcgggcgacgatcgcttcatcgcc
aagttcgaccgcgtgctgctgggcatcaccaaggcctcgctgtccaccgagtcgttcatc
tcggcggcgtcgttccaggaaaccacccgcgtccttaccgaggccgcggtcaccggcaag
cgcgacttcctccgtggtctgaaggaaaacgtggtggtcggtcgtttgatccccgccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaagccggtccgc
gtcagcgccagtgaggtggaagccgcactgaccgaggcgctgaactccagcggcagctga
DBGET
integrated database retrieval system
