Pseudomonas lalucatii: I0D68_13270
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Entry
I0D68_13270 CDS
T10193
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plau Pseudomonas lalucatii
Brite
KEGG Orthology (KO) [BR:
plau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plau03016
]
I0D68_13270
Enzymes [BR:
plau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I0D68_13270
Transfer RNA biogenesis [BR:
plau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I0D68_13270
Prokaryotic type
tRNA splicing ligases
I0D68_13270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QVM86720
LinkDB
All DBs
Position
complement(2764713..2765933)
Genome browser
AA seq
406 aa
AA seq
DB search
MKQPTAEVLQQAHGKPIKLWTQGVPVEPEARQQLLQTAQMPFIFRHLAVMPDVHLGKGST
IGSVIPTLGAIIPAAVGVDIGCGMIAVRTSLVAGELPDNLHGLRRAIEQAVPHGKSFGKH
DQGAWDEVPRAADQAWRALAGRFAAITDKYPRLQKTNNRQHLGTLGGGNHFIEVCLDEAE
RVWFMLHSGSRGVGNAIGTLFIELAQADMRQHLTNLPNKDLAYFAEGSRHFADYVEAVGW
AQDYARQNRALMMQAVIGAARRALGRPFEASLEAVDCHHNYVQKERHFGQEVLVTRKGAL
SAQRGQLGIIPGSMGARSFIVRGLGNPEAFCSCSHGAGRSMSRTQAKRRYGVADQIRATA
HVECRKDKAVIDEIPMAYKDIDAVMAAQRELVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcccaccgccgaagtcctccagcaggcccatggcaagccgatcaagctctgg
acccagggcgtgccggtggagccggaggcacgccagcagctgctgcagaccgcgcagatg
ccgttcatcttcaggcacctggcggtgatgcccgacgtgcacctgggcaagggctcgacc
atcggcagcgtgattcccaccctcggcgccatcatcccggccgccgtcggcgtcgacatc
ggctgcggcatgatcgccgtgcgcacctcgctcgtggccggcgagctgccggacaacctg
cacggcctgcgccgcgccatcgagcaggcggtgccccacggcaagagcttcggcaagcac
gaccagggcgcctgggacgaggtgccgcgcgccgccgaccaggcctggcgcgccctcgcc
gggcgcttcgcggccatcaccgacaagtacccgcggctgcagaagaccaacaaccgccag
cacctcggcaccctgggcggtggcaaccacttcatcgaggtctgcctggacgaagccgag
cgcgtctggttcatgctgcacagcggctcgcgcggggtcggcaacgccatcggcacgctg
ttcatcgaactggcccaggccgacatgcgccagcacctgaccaacctgccgaacaaggac
ctcgcctacttcgccgaaggcagccggcatttcgccgattatgtcgaggccgtgggctgg
gcccaggactatgcccggcagaaccgcgcactgatgatgcaggcggtcatcggcgcggcg
cggcgggcgcttggccgaccgttcgaggccagcctggaagcggtcgactgccaccacaat
tatgtgcagaaggagcgccacttcggccaggaggtgctggtgacccgcaagggcgcgctg
tcggcgcagcggggccagctgggcatcatccccggttccatgggcgccaggagcttcatc
gtccgcggcctgggcaaccccgaggcgttctgctcctgcagccacggcgccggccgcagc
atgagccgcacccaggcgaagaggcgctacggcgtggcggaccagatccgtgccaccgcc
catgtcgagtgccgcaaggacaaggcggtgatcgacgagattcccatggcctacaaggac
atagacgcggtgatggcggcccagcgcgagctggtggaagtggtgcataccctgcgccag
gtggtctgcgtcaagggctga
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