Planomicrobium sp. Y50: DNR44_000800
Help
Entry
DNR44_000800 CDS
T06390
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
play
Planomicrobium sp. Y50
Pathway
play03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
play00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNR44_000800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
play03019
]
DNR44_000800
03009 Ribosome biogenesis [BR:
play03009
]
DNR44_000800
Enzymes [BR:
play01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DNR44_000800
Messenger RNA biogenesis [BR:
play03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DNR44_000800
Ribosome biogenesis [BR:
play03009
]
Prokaryotic type
rRNA helicases
DNR44_000800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
NDK
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QHJ69256
LinkDB
All DBs
Position
complement(156602..158122)
Genome browser
AA seq
506 aa
AA seq
DB search
MVKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPL
IEKIDTKDGNVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNR
PQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLL
FSATMPDAIRKIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDVLSRLLNVQQP
ELAIIFGRTKRRVDELAKALNIRGYVAEGIHGDLSQAKRMSVLKQFKAGKVDILVATDVA
ARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTK
KKMEALVPPTADEAVLGQKRVAMEQLIEMTDKNNLGDYREFATQMLEKHDAVDLIAAALK
TLTKEPEDVPVSISEERPLPSRGGGGYKGKSGGSRSGSGGGYKGNRSSGSGRPASRGASS
GASRRREGGSGGTGGGRPGRTRRHES
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttggttaaattttcagagttaaatatcagcgaaacaactttaaagtccgtaaaacgcatg
gggtttgaagaagcaacgccgattcaagaaggtacaatccgcttaggtatggaaggcaag
gacattatcggacaagcccaaacgggaactggtaaaacaactgcattcggtattccgttg
atcgaaaaaatcgacactaaagacggcaatgtacaaggattgatcatcgcgccaacacgc
gaattggcaatccaggtttcagaagagctttacagattgggtcaggataaaaacgtgcgc
attctttcagtatacggaggccaagaaatcagccgccaaatccgtgcactgaaaaaccgt
ccacaaattatcgttggtacacctggacgtcttttggaccatataaatcgccgtacgctt
aaattggacaacgttaacacattgatccttgacgaagcggacgaaatgttgaacatgggc
ttcatcgaagatatccaaacaatcatggcaagtgttccagatactcgccagaccttgttg
ttctcagcaacaatgccggatgctatccgcaaaattgcagagaaattcatgaagactcca
gaaatcgttaaaatcaaatcaaaagaaatgacagttgaaaacatcgaacaattttatgtt
aaatctgttgaacgcgaaaaattcgacgttctttcacgtcttttgaatgttcagcaacct
gaacttgcaatcatcttcggacgcacaaagcgccgggttgatgagttggctaaagctttg
aatatccgcggctatgtagctgaaggaattcacggtgacttgagccaggcaaaacggatg
tctgtattgaagcaattcaaagcaggcaaagttgatatcttggtagcaactgacgtagca
gcccgcggacttgatatctcaggcgtttcacacgtatacaactttgatattcctcaagat
ccggaaagctatgttcaccgtatcggccgtactggccgcgcaggtaaaaaaggagtcgca
gtcacgtttgttacacctcgtgaaatgggctacttgagcattgttgaacgcacgacgaag
aaaaaaatggaagcattggttccgccgactgctgatgaagccgtacttggccaaaaacgc
gtcgcaatggaacaactgattgaaatgacagataaaaacaatcttggtgactatcgcgag
ttcgcgactcaaatgcttgaaaagcatgacgcagttgatttgattgcagcagctctcaaa
acattgactaaagaaccggaagatgttccagtttctatttctgaagagcgtccattgcca
tcacgcggtggcggaggctacaaaggaaaatctggtggatcacgcagcggaagcggcggg
ggctataaaggcaaccgttcttcaggctcaggccgtccggcaagccgcggcgcaagctca
ggcgctagccgccgccgtgaaggcggatccggtggaactggtggaggacgtccaggacgt
actcgccgccacgaatcttaa
DBGET
integrated database retrieval system
