Planococcus halotolerans: DNR44_003085
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Entry
DNR44_003085 CDS
T06390
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
play
Planococcus halotolerans
Pathway
play03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
play00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DNR44_003085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
play03021
]
DNR44_003085 (rpoC)
03400 DNA repair and recombination proteins [BR:
play03400
]
DNR44_003085 (rpoC)
Enzymes [BR:
play01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DNR44_003085 (rpoC)
Transcription machinery [BR:
play03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DNR44_003085 (rpoC)
DNA repair and recombination proteins [BR:
play03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DNR44_003085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QHJ69669
LinkDB
All DBs
Position
complement(580106..583711)
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVLVAYQTGHVHLHTRIAIQ
AGSVNNPTFTAEQNKMLLLTTVGKIIFNEILPKSFPYINEPTDYNLQVETPSKYFVPTTT
DVRKHIEEAELVTPFKKKILGEIIAEVFKRFHITETSRMLDRMKSLGFKYSTQAGITVGI
SDIVVLPDKGEILVEAQDNVDKVMKQFRRGLITEEERYARVISFWSSAKDVIQEKLMASL
DNMNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKEVIVAKDELITQDLTRLIVEAGIKEVTIRSAFTCNTKHGVCK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEVDEIREGQKEITIQGDVETRKYLAPYNARLKVQADDVIVR
GQVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAPAEEIVSSE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaaaatcggattggcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaattaactaccgtacattaaaa
ccggaaaaagacggtttgttctgtgaacgtattttcggtcctacaaaagactgggaatgc
cattgcggaaaatacaaacgcgttcgttataaaggtgttgtctgtgatcgttgtggcgta
gaagtcacacgttcaaaagttcgccgtgaacgcatggggcacatcgaattagctgcgcca
gtttcacatatttggtatttcaaaggcattccaagccgcatgggacttatccttgatatg
tcaccgcgttcattggaagaagttatttacttcgcttcatatgttgttatcgaccctgcg
gatacaccgcttgaaaagaaacaattactgtctgaaaaagaataccgcgcttaccgtgac
aaattcggtaagaaattccaggctgcaatgggagccgaagcgatcaaacgacttcttcag
gaaatcgatcttgagcgcgaaacggattcattgaaagaagaattgaaaacagctcaagga
cagcgccgcacacgtgcgataaagcgcctcgaagttgtggaatccttccgtaattcgggc
aataacccggattggatgattcttgatgttctgcctgtaattccaccggagcttcgtccg
atggttcaattggacggcggccgtttcgctacttctgatttgaacgatctttaccgtcgt
gtaatcaaccggaacaaccgtttgaaacgcctgttggatttgggcgcgccaagcatcatt
gttcaaaacgagaaacgcatgctgcaggaagctgtagatgcgctgattgataatggccga
cgcggccgtcctgttacagggccgggtaaccgtccattgaaatctctttctcatatgctt
aaagggaaacaaggacgcttccgtcaaaaccttcttggtaaacgtgtcgattattcaggc
cgttccgttattgttgtcggaccgaacttgaaaatgtatcaatgtggtttaccgaaaggg
atggcgatcgagttgttcaagcctttcgttatgaaagagcttgttgaacgcggacttgcc
cataatattaagagcgcgaaacgcaaaatcgaacgtcttcattctgaagtttgggatgta
ctggaagatgtcatcaaggagcatccggttcttttgaaccgagcaccgacacttcacaga
ctcggtatccaggctttcgaaccgacattggtcgaaggtaaggcaattcgccttcaccca
ttggtatgtacagcatacaacgccgattttgatggtgaccaaatggctgttcacgttccg
ctttcatctgaagcacaggcagaagcaagattattgatgcttgccgctcagaacattttg
aacccgaaagacggaaaaccagttgttactccttcacaggatatggttttgggtaactat
taccttacgttggagcgcaaaggcgcaactggcgaaggggctacgttctctggacctgaa
gaagtgttagttgcttatcagactgggcatgttcatttgcatactcgtatcgcaatccag
gccggttctgtaaacaacccgacttttacggctgaacaaaacaagatgttgttgctgacg
actgtcggtaagatcattttcaatgaaattctgccgaaatcgttcccgtatattaacgaa
ccgacagattataatctgcaagttgaaacgccatcgaaatattttgtccctacaacgaca
gatgttcgtaagcacatcgaagaggctgaacttgtaacaccattcaagaaaaaaattctt
ggtgaaatcattgctgaagtgttcaaacgtttccatatcacggaaacttcaagaatgctt
gaccgcatgaagagccttggattcaagtattccactcaagctggtattacggttggtatt
tccgatatcgtcgttcttccggacaaaggtgaaattcttgtagaagcccaggataatgtg
gataaagtcatgaaacaattccgccgtggtttgattactgaagaggaacgctatgcacgc
gtcatttctttctggagcagcgcaaaagatgttatccaggaaaaattgatggcttccctc
gataatatgaacccgatctttatgatgagtgactccggtgcccgtggtaacgcatccaac
tttacccaattagctggtatgcgcggactcatggccaacccggcaggacgcatcattgaa
ctaccaatcaaatcttcattccgtgaaggtttaacggtattggaatacttcatctcaact
cacggtgcgcgtaaaggtcttgccgatacagcacttaaaactgccgattcaggttacttg
acccgtcgtctcgtagacgttgcacaagatgcaattgtccgcgaaaatgactgtggaact
gaccgcggcttgttggttggagcgttgatggaaggtacggaagtaatcgaagagttggat
gagcgtatcgttggacgacacgctaagaaaacaattcgccatcctgaaacaaaagaagta
attgttgcaaaagatgaattgattacacaggacttgactcgcctgattgttgaagctggc
atcaaagaagtgacaatccgttcagcatttacttgtaacacgaaacacggcgtctgcaaa
aaatgttacggtacgaaccttgcgactggagacgaagttgaagtgggcgaagcagttggt
attattgccgctcagtcaatcggggaaccaggaacgcagcttacgatgcgtacattccac
acaggcggtgtagcaggagacgatatcacacaaggtcttccgcgtatccaggaaattttc
gaatcaagaaatccgaaaggccaggcagtgatttctgaaattacaggtacggttactgaa
gttgatgaaatccgcgaaggccaaaaagaaatcacgattcaaggtgacgtggaaacccgt
aaataccttgctccttataatgcgcgacttaaagtgcaggcggatgatgtaatcgttcgc
ggacaggtactaactgacggttcgattgatccgaaacaattattgcaagttaaagatgtt
caagctgttcaagtgtatctattgaaggaagttcaaaaagtttaccgtatgcagggtgta
gaaatcggtgacaaacacgtggaagtcatggttcgccagatgttccgtaaagtccgtgtc
attgaagccggtgatacagaattgctgccaggttcacttttggatatccaccaattcaca
gaagcgaatgtgaaagctgttcttgaaggaaaccttccggcaacaagccgcccggttatc
ctcgggatcactaaagcttcacttgaaacagaatcattcctttcagctgcatcgttccag
gaaacaacgcgcgtcttaacagatgctgcaattaaagggaaacgtgatgaattactcggc
ttgaaagaaaatgtcatcattggtaaactcgttccggctggtactggaatgcagcgttac
cgccagattaaaattgctcaaagcgaaaaagcgcctgcggaagaaatcgtcagttctgaa
tcgtaa
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integrated database retrieval system
