Providencia lanzhouensis: ACIH2S_11325
Help
Entry
ACIH2S_11325 CDS
T11188
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plaz Providencia lanzhouensis
Pathway
plaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACIH2S_11325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plaz03400
]
ACIH2S_11325 (mfd)
Enzymes [BR:
plaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACIH2S_11325 (mfd)
DNA repair and recombination proteins [BR:
plaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACIH2S_11325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XTS05558
LinkDB
All DBs
Position
2382932..2386378
Genome browser
AA seq
1148 aa
AA seq
DB search
MSSNYRYELPSRAGDVRHLGCLIGAAGPLECAEMIERHQGPVVIVTRDMQNALRVRDELQ
QFTQHPIETLSDWETLPYDNFSPHQEIISHRLSTLYRLPTLQKGALILPVNTLMQKVCPA
DFLTGHALVMAKGDKLSRDSLRDELDKAGYRHVEQVLEHGEYAIRGALLDLFPMGSDLPF
RIDFFDDEIDSLRTFDVDTQRTLEEVSAINLLPAHEFPTDKDAIERFRSQWRERFEVRRD
PEHIYQQVSKNTLPSGIEYWQPLFFAEPLPSLFEYLPANTLFVSQNLQEPAERFQQDAQQ
RYESRGVDPMRPLLPPAELWLTVEQLNQNLKNWPRVQLSTEKLPKKAANTNLDYQPLPDI
STQGQSKNPLEKLRQFTEQFDGTIVFSVESEGRRETVSELLARLKIRPEIISNYFDQTQD
RFAITIGAAEHGFIQPESHRALICESDLLGERVVRRRSDQRRTINTDTLIRNLAELRPGQ
PVVHIEHGVGRYQGLITLEAGGVPAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENAP
LHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDKEQYQEFCQGFPFET
TTDQEMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVNNNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVRIEMLSRFKTAKEQQQIIAEAAEGKVDILIGTHKLLQSDIQWK
DLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVRQYDDLVVREAILRETLRGGQVYYLYNDVENIEKAKARLEALVPEARFVVG
HGQMRERELERVMTDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMTTIGFTLYMELLESAVDALKEGREPSLEDLTSQQTEVELRMPVLLPDEYIHDVN
IRLSFYKRIASAKDQTELDELRIELIDRFGTLPDAGKFLLSTAGIRLQAQKLGMKRIEAH
EKGGFIEFNERNKVDPMFLISLLQNQPKTFRMEGPVRLKFFHDLADRATRLDFIKQLVAD
FDEHQLVS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaattatcgttatgaactgcccagtcgtgctggagatgtccgccatttaggc
tgcttaattggtgctgcgggtcccttagaatgtgcagaaatgattgaacgccatcaaggt
cctgtcgtgattgttacgcgtgatatgcaaaacgcattacgcgttcgtgatgaacttcaa
cagtttacccaacatcctatagagacactgtcggattgggaaacgctaccctacgataat
ttttcgccgcatcaagaaatcatttctcaccgtttatccactctataccgcttgccaaca
ctgcaaaaaggggcgctgatcctccccgttaataccttaatgcagaaggtatgccctgct
gattttctaacgggacatgctttagtgatggctaaaggcgataagctctcacgcgatagc
ctgcgagacgaactagataaagccggatatcgccatgttgagcaagtacttgagcatggt
gaatatgcgattcgcggagcattactcgacttattcccaatgggtagcgacctgccattt
cgtatcgacttttttgatgatgaaattgatagcctacgcacctttgacgtcgatacccaa
cgcactttagaagaagtcagcgcaatcaacttgttgccagctcacgagtttccgaccgat
aaagacgctatcgagcgttttcgtagccaatggcgcgaacgttttgaagttcgtcgtgat
ccggaacatatctatcagcaagtgagtaaaaacaccctgccaagtgggattgagtattgg
cagccactgtttttcgctgaaccgttgccctctttatttgaatatttacccgctaacacc
ctgtttgtttcgcaaaatctgcaagaacccgcagagcggttccagcaagatgctcagcaa
cgctatgaaagccgtggtgttgacccaatgcgcccattgcttccccctgccgagttatgg
ttaaccgtcgaacagctgaatcaaaacttaaaaaattggcctcgggtacagctgtctacg
gaaaaattaccgaagaaagccgccaataccaatttagactatcagccacttccggatatt
agcactcaagggcaaagtaaaaacccattagaaaaactgcgtcagttcaccgaacagttt
gatggcacgattgtgttctccgtggagagtgaaggacgccgagaaacggtgagtgaatta
ctcgctcgcctgaaaatccgccctgaaattatcagcaattattttgatcaaacccaagac
cgttttgccattacgattggcgcagcagagcacggctttattcagccagaaagccaccgc
gcattaatttgcgaaagcgatttactgggtgaacgagttgttcgccgccgcagtgaccaa
cgccgcaccatcaataccgatacgctcattcgtaaccttgcagagctacgcccgggtcaa
cccgtggttcatattgagcatggtgtcggacgctatcaaggcttaatcaccttagaagcg
ggtggtgttcccgccgagtatttgatcctcacctacgcaggcgaagataaactgtatgtc
cctgtttcttcattacatttaattagccgctatgcaggtggagccgatgaaaatgcaccg
ctgcataagttgggtagtgacagttggggacgcgctcgccaaaaagcggcggaaaaagtg
cgagatgtggcagccgaacttctggatatttatgctcagcgagccgcaaaagccggattc
gccttcaaacatgataaagagcagtaccaagaattttgccaaggtttcccattcgaaact
accaccgaccaagagatggcgattaatgcagtattgagtgatatgtgccagcctctggca
atggatcgcttagtctgtggcgatgtgggctttggtaaaacagaagtcgccatgcgagct
gcatttttagcggtcaacaataataagcaagtggctgtactggttcctaccactctacta
gcccagcaacattatgataatttccgcgaccgctttgcaaattggccagtacgtatcgaa
atgctatcgcgctttaaaacggccaaagagcagcaacaaattattgcggaggccgcagaa
ggcaaagtggatattttgattggtacccataaattgctacaaagcgatattcaatggaaa
gatctgggtttactggtagtggatgaagagcaccgtttcggagttcgtcataaagagcgc
attaaagcgatgcgtgctgatgtggatattctgaccttaacggcgacacctattccacgt
accctgaatatggcgatgagtggtatgcgggatttatcaattatcgcaaccccacccgct
cgccgcttagccgtaaaaacctttgttcgccaatatgatgatttagtggtgcgcgaagcg
attctgcgggaaacattacgcggtggtcaggtttattatctctataatgatgtggaaaat
atcgaaaaagccaaagcgcgtcttgaagccttagtgcctgaagcgcgatttgttgtgggt
catggacagatgcgagaacgcgaacttgagcgagttatgacggatttccaccatcaacgg
tttaatgtcttgatctgcaccacgattattgaaacgggtatcgacatcccaaccgcaaat
accattattattgaacgtgctgaccactttggtttagcgcagttgcatcagctacgcggt
cgtgtgggtcgttcccatcaccaagcttatgcttacctgctgacaccgcatccaaaagcc
atgaccaccgatgcacagaaacgccttgaagcaatatcgtctcttgaagatttaggggct
gggtttgcgctagcgactcatgaccttgaaattcgtggagctggcgagctattgggggaa
gaccaaagtgggcagatgactaccatcggtttcaccttatatatggagttactcgaaagt
gcggtcgatgcactgaaagaaggacgcgagccatccctggaggatctcaccagtcagcaa
actgaagtggaactgcgtatgccagtactgctgcctgatgagtatatccatgatgtgaat
atccgcctgtctttctataaacgtattgccagcgctaaagatcagaccgaactggatgag
ctgcgtatcgagctaatcgaccgctttggtaccttacctgatgcaggtaaattcttgctg
tcgacagcaggcattcgtttacaagcgcagaaactgggcatgaagcggattgaagctcat
gagaaaggcggatttattgagtttaatgaacgcaacaaagtcgatccgatgttcttaatc
agcttactgcaaaatcagccgaaaacgttccgcatggaagggcctgtccgtttgaaattc
ttccacgatttagccgacagagcgacgcgtttagactttatcaagcagctagtcgctgat
tttgatgagcatcagctggtatcgtag
DBGET
integrated database retrieval system
