Providencia lanzhouensis: ACIH2S_11485
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Entry
ACIH2S_11485 CDS
T11188
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
plaz Providencia lanzhouensis
Pathway
plaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACIH2S_11485 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plaz03400
]
ACIH2S_11485 (sbcB)
Enzymes [BR:
plaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACIH2S_11485 (sbcB)
DNA repair and recombination proteins [BR:
plaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACIH2S_11485 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACIH2S_11485 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACIH2S_11485 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XTS08898
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All DBs
Position
2415951..2417390
Genome browser
AA seq
479 aa
AA seq
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MDLILKNKHNQPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDY
LPQPEAVMITGITPQIAMANGMNEAEFAKRIHNAFSVPNTCIMGYNNIRFDDEVTRNIFY
RNFYDPYAYSWQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAH
ENAHDAMSDVLATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFG
AVRSYVSLVAPLAWHPENKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDELPVP
VKLVHINKCPILAPEKTLRTVDAERTGIDRDLCMRNLELLRKNPDVRNKLIELFSVAQQF
EENNDVDSQIYNGFFSPSDRSTMDIIRETPPQNLPALDLSFEDKRMKELFFRYKARNFPA
TLSYDEQQRWLQHRRDYFTESRLTDYLQQIQLLMEVHHEDEKRCQQLKALVNYAAELAS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggatctcattttgaaaaataagcataatcagccgaccttttttatccatgactatgaa
acatttggtaagcatccggctctggatcgccctgctcagtttgcgggtgtgcggacagac
ttagatttcaacatcatcgatgaacctgaagtattttactgcaaacctacggatgattat
cttcctcaaccagaagcggtaatgataaccggcattaccccgcaaatcgcaatggccaac
ggcatgaatgaagcggaatttgcgaagcgcatccataacgcattcagcgtacctaacacc
tgcattatgggttacaacaatattcgctttgatgatgaagtgacgcgaaatattttttat
cgtaacttttatgacccttacgcctatagctggcagcaaggtaattctcgctgggattta
ttggatgcattacgcgcttgctttgcgctgcgccctgaagggatcaattggccagaaaat
gatgacgggttacctagcttacgccttgagcacttaaccaaggccaacggtgtggctcat
gaaaatgcccatgatgctatgtctgacgttttagccaccattaatatggctaagttactg
aaacaagctcaacctcgtatgtttgattatttctatcaactgcgaaataaaaacaaagtt
aaccagctgatcgacatcgtggatatgaccccgttagttcatgtatcggggatgtttggc
gcggtacgctcttatgtcagcttagtggcccctctcgcttggcaccctgagaataaaaac
gcggtgattatgtgtgacctgtcagcagatatgtcgccactactaacgttaaatgcggat
gaacttcgtgagcgcttatacacaccaaaagctgagttaggtgacgagctacccgtccca
gttaaactggtacatattaacaaatgcccaatccttgcccctgagaagaccttgcgaaca
gtagatgctgaacgtacaggcattgaccgtgacctgtgcatgcgtaatttagagctgtta
cgtaagaatcctgatgtgcgtaataaactgattgagttgtttagcgtcgcccaacaattt
gaagaaaataatgatgtagatagccaaatctataatggttttttcagcccatctgatcgc
tctacgatggatattattcgcgaaacgccaccccagaatttacctgcgttagatcttagc
tttgaagataagcgaatgaaggagctatttttccgttataaggcacgcaatttccctgcg
acactctcttatgatgagcaacagcgttggttacagcatcgccgcgattattttactgag
agccgtttaacggattatctacagcaaattcaattactcatggaagttcatcatgaagat
gaaaaacgctgtcagcaattaaaagccttagtgaactatgccgcagaattagcaagttga
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