Candidatus Portiera aleyrodidarum TV-BCN: PTV_026
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Entry
PTV_026 CDS
T03736
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plb
Candidatus Portiera aleyrodidarum TV-BCN
Pathway
plb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTV_026 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plb03021
]
PTV_026 (rho)
03019 Messenger RNA biogenesis [BR:
plb03019
]
PTV_026 (rho)
Transcription machinery [BR:
plb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PTV_026 (rho)
Messenger RNA biogenesis [BR:
plb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PTV_026 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
CEI58981
LinkDB
All DBs
Position
I:28194..29453
Genome browser
AA seq
419 aa
AA seq
DB search
MNLNELKKKNVHELLTLAISMKIDNILRSRKQDIIFAILKKQAKGGEDIYGEGVLEILQE
GFGFLRSADSSYQAGPDDIYVSPSQIRRFNLRKGDSIYGKIRPPKEGERYFALLKVNKIN
FDRIETVKQKILFENLTPLFPNYRLMMEIGNGSTEDLTSRILDLVAPIGKGQRGLIVAPP
KAGKTMMMQNIANAIVRNSPECYLIFLLIDERPEEVTEMSRTVRGEVIASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVIMLDSITRLARAYNTVVPSSGKVLTGGVDSNALEKPKRF
FGVARNIEEGGSLTILASALIDTGSKMDDIIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLCSEEEIQRMWILRKLLHTMEDVAATELLIDRLKNTKNNIDFFESMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgaacttaaaaaaaaaaatgtacatgaattattaacattagctatatct
atgaagatagataatatattacgttctagaaaacaagatattatatttgctattctaaaa
aaacaagctaaaggtggagaagatatttatggagaaggagttttagaaattttacaagaa
ggttttggctttttaagaagtgctgatagttcttatcaagccggccctgatgatatatat
gtttctccatcacaaattcgacggtttaatttacgtaaaggtgatagtatttatggtaaa
atacgtcctccaaaagagggtgaaagatattttgctttattaaaagtaaataaaataaat
tttgatagaatagaaactgttaaacaaaaaattttatttgaaaatttaactccattattt
cccaattatagattaatgatggaaattggtaatggttctactgaagatttaacttctaga
attttagatttagttgctcctattggtaaaggacaacgtggtttaattgtagctcctcca
aaagcaggtaaaactatgatgatgcaaaatattgctaatgctatagtacgtaatagtcct
gaatgttatttaatttttttattaattgatgaacgtcctgaagaagtaacagaaatgtct
agaacagtaagaggtgaagttatcgcctctacatttgatgaaccacctacaagacatgta
caagtagctgaaatggttattgaaaaagctaaaagattagttgaacataaaaaagatgta
gttataatgttagattctattactagattagcaagagcgtacaatacagtagttccttct
tcgggtaaagtcttaacagggggagtggattcaaatgctcttgaaaaacctaaaagattt
tttggtgtcgcacgtaatatagaagaaggtggaagtttaactattttagcatctgcttta
atagatactggatcaaaaatggatgatataatttttgaagaatttaaaggtacaggtaat
atggaagcacatttagatcgtaaattagctgaaaaaagagtttttcctgcaataaatatt
agacgttctggtactcgtagagaggatttattatgtagtgaagaagaaatacaacgtatg
tggattttacggaaattattacatacaatggaagatgtagcagcaacagaattattaata
gatagattaaaaaatactaaaaataatatagacttttttgaatcaatgaaaagaagataa
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