Candidatus Portiera aleyrodidarum TV-BCN: PTV_080
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Entry
PTV_080 CDS
T03736
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plb
Candidatus Portiera aleyrodidarum TV-BCN
Pathway
plb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTV_080 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plb03019
]
PTV_080 (deaD)
03009 Ribosome biogenesis [BR:
plb03009
]
PTV_080 (deaD)
Enzymes [BR:
plb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTV_080 (deaD)
Messenger RNA biogenesis [BR:
plb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTV_080 (deaD)
Ribosome biogenesis [BR:
plb03009
]
Prokaryotic type
rRNA helicases
PTV_080 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CEI59040
LinkDB
All DBs
Position
I:complement(84581..85858)
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AA seq
425 aa
AA seq
DB search
MSNFKKFALLPAVLKSIKVKGYENPSTVQLKTIPWLLEGRDLLGKAQTGTGKTAAFALPL
LTRIDINIKHTQVLVLAPTRELAQQVSLNFIRYGKYVKNIELITICGGQEYRDQVRGLNK
GAHIVVGTPGRVIDHLTRGSMNLKHLKALVLDEADEMLRMGFIEDVEIILKKMPITTQRV
FFSATVPFEIEPIVNRYLVNPVKIHIEYKKVTIIQRLCKIENNAKFEALARIIEIYKIDA
AIVFVRTRAYCSKLVEKLTTRSISAAALSGDLNQKLRDRTVSRLKLGKVNILVATDIAAR
GLDLPSITHVINYDIPNDKEAYIHRIGRTGRAGRTGIAITFVNRSELRKIKWLEKAIGQK
MEIPNEKALINHRDRIFKNRATAILASRNYNQRDLVQELVDKGFNPIELAAVFAHLAREK
EAKIG
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattttaaaaaatttgctttattgccagcggttttaaagtctattaaagttaag
ggttatgaaaatccttccactgtacaactgaaaacaattccttggttacttgaaggacgt
gatttattaggtaaagctcaaacaggaacagggaaaacagcggcgtttgcattaccttta
ttaactagaatagatattaatattaaacatactcaggtattagtattagcacctactcgg
gaacttgcacaacaagtatctttaaattttattagatatgggaaatatgtaaaaaatatt
gaattaataactatatgtggtggtcaagaatatagagatcaagtacgtggtttaaataaa
ggtgctcatattgtagtaggtactccaggacgtgtgatagatcatttaacaagaggttct
atgaatttaaaacatctaaaggcactagtactggatgaagctgatgaaatgttacgtatg
gggtttatagaagatgtagaaataatacttaaaaagatgccaataacaacccaaagggtg
tttttttctgcaacggtaccattcgaaatagaaccaatagttaatcgttatttagttaat
cctgtaaaaattcatattgaatataaaaaagtaactattattcaaagattatgtaaaatt
gaaaataatgctaaatttgaagcattagcgcgtattatagaaatttataaaattgatgca
gcaattgtatttgtacgtactagagcttattgtagtaagttagtggaaaaattaactaca
cgtagtatatcagcagcagcactttctggtgatttaaatcaaaagttacgtgacagaacg
gtatctagattaaaattaggtaaagttaatatattagttgctacagatatagctgcaaga
ggacttgatttacctagtattactcatgtaattaattatgatataccaaatgataaagaa
gcatacattcatcgtattggtcgtacaggtcgtgcaggacgtacaggtatagctattact
tttgtaaatagaagtgaattacgaaaaataaaatggttagaaaaagctattggacaaaag
atggaaataccaaatgaaaaggcattaataaatcatcgtgatcgtatttttaaaaatcgt
gcaactgcaatattagcttctagaaattataatcaacgggatttagtacaagaattagta
gataaaggttttaatccgatagaattagcagcagtatttgcacatttagcacgtgaaaaa
gaggcgaaaattggataa
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