Candidatus Portiera aleyrodidarum TV-BCN: PTV_141
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Entry
PTV_141 CDS
T03736
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plb
Candidatus Portiera aleyrodidarum TV-BCN
Pathway
plb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTV_141 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plb03021
]
PTV_141 (rpoC)
03400 DNA repair and recombination proteins [BR:
plb03400
]
PTV_141 (rpoC)
Enzymes [BR:
plb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTV_141 (rpoC)
Transcription machinery [BR:
plb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PTV_141 (rpoC)
DNA repair and recombination proteins [BR:
plb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PTV_141 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
CEI59105
LinkDB
All DBs
Position
I:complement(129933..134108)
Genome browser
AA seq
1391 aa
AA seq
DB search
MKKKISMVVGGLYKSMNDLVKKIKSKTYYEEFDAIKISLASPEMIRSWSYGEVKKPETIN
YRTLKPERDGLFCAKIFGPIKDYECICGKYKRMKHRGIICEKCGVEVTKTCVRRERMSHI
ELASPVAHIWFLKSLPSRIGMLLDMTLRDIERILYFEVFVVIEPGMTNLNKGQLLNEEKY
FEAIEEYGDEFKARMGAEAIKKLLEDIDLVEEIEKLRKEIKEVNSENKMKRLSKRLKLIE
SFKKSGNKPSWMILDVLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIEL
KAPEIIVRNEKRMLQEAVDALLDNGRRGRAIIGSNKRPLKSLADMIKGKQGRFRQNLLGK
RVDYSGRSVITVGPNLRLKQCGLPKKMAIELFKPFIYSKLQRNGHAATIKAAKKMVEKEV
PEVWDILADVICEHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQ
MAVHVPLTLESQLEARELMMSTKNLLSPASGEPIIVPSQDVVLGLYYMTRDKGNVKGEGM
IFSNISEVELAYSNKKVDLHARIKVRLTDWIKDEKQKLIKQTSIRSTTVGRAMLYSMLPK
GMSFELINRPMKKKVISKLINLVYRNIGLKEAVKLADKLMYTGFKLATWSGASIGVNDFI
IPSSKEYIINKAEKEVKEIGKQYIYGLVTLGEKYNKVIDIWSKANDKVAKAMMKGISKNV
VIDKVGKQVEEESFNSVFIMADSGARGSAAQIRQLAGMRGLMTKPDGSIIETPITANFRE
GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCNTQEGLLMYSV
IEGGDIRVSITEKILGRILAKNILDLNGKVLIKAGTLLDEEWCNKIYRLGIDEVFVRSII
NCETLYGVCVMCYGRDLSRGNLVKIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRTLI
KDNVQVKYGGIIRFHNMKAVERNDKKLIVVSRYSAIYIIDKKGREKEYYRLPYGTELNIR
EGKFVNAGTIIANWDPHTHPIISEVSGYIKFIEMEEGLTMHSTVDEMTGISSIEILEIGS
RPVSGRDKRPRIMLQDEEGKEISLPGYNTPVQYSLPGKALISVENGRKIGVGEIISRIPV
EALGNKDITGGLPRVADLVEARKPKEYAIMAEITGRIKFGKETKGKRRIIINSEESGEKK
EILINKGRQLSVFEGDKVEKGEVISDGPSNPHDILRLLGVEELAKYIINEIQEVYRLQGV
GINDKHIEVIVRQMLRKVKIIDSGDSNFIKGDQVEVVSVLEENRKLYKLKKKIIIYERIL
LGITKASLATSSFISAASFQETTRVLTEAAVNGRYDKLRGLKENVVVGRLIPAGTGLAYH
NERRRKNSKKH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaaaataagtatggttgttggggggttgtacaaaagtatgaatgatttggta
aaaaaaataaaatctaaaacatattatgaagaatttgatgcaataaaaatttcattagct
tctccagaaatgataagatcatggtcatatggggaggtaaaaaaaccagaaacaattaat
tatcgtacattaaaaccagaaagagatggattattttgtgcaaaaatatttggtcctata
aaagattatgaatgtatttgtggtaagtataaaagaatgaaacatagaggaataatatgt
gaaaaatgtggtgtagaggttactaaaacatgtgtacgtagagaaagaatgagtcatata
gagttagcatctcctgtagcacatatatggtttttaaaatcattaccaagcaggataggg
atgttattagatatgacgttaagagatatagaaagaattttatattttgaagtttttgta
gtgatagaaccagggatgacaaatcttaataaaggtcaattattaaatgaagaaaaatat
tttgaagcaatagaagaatatggtgatgaatttaaggcaagaatgggtgcagaagctata
aaaaaattattagaagatatagatttagtagaagaaatagagaaattaagaaaagaaata
aaagaagttaattcagaaaataaaatgaaaagattatctaaaaggttaaaattaatagaa
tcatttaaaaaatcaggaaataaacctagttggatgattttagatgttttacctatatta
cctccagatttaagaccattagtaccattggatggaggaaggtttgcaacttcggattta
aatgatttatataggcgtgttattaataggaataatagattaaaaagattaattgaatta
aaagctccagaaattattgtacgtaatgaaaaaagaatgttacaagaagccgtagatgcg
ttattagataatggaagaagaggaagagcaattataggttcaaataaaagaccgttaaaa
tcattagcagatatgataaaagggaaacagggaagatttcgtcaaaatttattaggtaaa
cgtgtagattattcaggaagatcggtaattaccgtaggtcctaatttaagattaaagcaa
tgtggtttaccaaaaaaaatggctatagaattatttaaaccttttatatattcaaaatta
caaagaaatggacatgcagcaacaataaaagcagcaaaaaaaatggttgaaaaagaagta
ccagaggtatgggatatattagcagatgtaatttgtgaacatccagtgttattgaataga
gcacctaccttacatagattaggtattcaagcgtttgagccaattttaatagaaggtaaa
gcaatacaattacatccattagtatgtgcagcatataacgcagattttgatggtgatcaa
atggcagtacatgtacccttgacattggaatcacaattagaagctagagaattaatgatg
tccaccaagaatttattatctccagcaagtggagaacctataatagtaccatcacaagat
gtagtgttaggtttatattatatgacaagggataaaggtaatgtaaaaggtgaagggatg
atattttctaatataagcgaagtggaattagcttatagcaataaaaaagttgatttacat
gctcgtattaaagtaaggttaacagattggataaaagatgaaaaacaaaaattaattaaa
caaacatcaatacgcagtactactgtaggtcgtgctatgttatatagtatgttgcctaag
ggaatgagttttgaattaataaatagacctatgaaaaaaaaagtaatatctaaattaatt
aatttagtttatagaaatattggattaaaagaagctgttaaattagcagataaacttatg
tatacaggttttaaattagctacttggtcaggtgcatcaattggagtgaatgattttatt
ataccgagttcaaaagaatatataataaataaagctgaaaaagaagtaaaagaaatagga
aaacaatatatttatggacttgtaacattaggagaaaaatataataaagtaattgatatt
tggtcaaaagctaatgataaagtagcaaaagctatgatgaaagggatatctaaaaatgtt
gtaatagataaagtaggaaaacaagttgaagaagaatcttttaatagtgtatttattatg
gcagattcaggagcaagaggaagtgcagctcaaattagacaattagcaggtatgcgtggt
ttaatgacaaaaccagatggttctattattgaaacacctataacagcaaattttcgtgaa
ggattaaatgtattacaatattttatatcaactcatggtgctagaaaaggtttagcagat
acagcattaaaaacagcgaattcaggatatttaacaagaagattagtagatgtagcacaa
gatgtagtgataacggaaatagattgtaatacacaagagggtttattaatgtattcagta
atagaaggaggggatataagagtatcaataactgaaaaaatattaggtagaatattagcc
aaaaatattttagatttaaatgggaaagtattaataaaagcaggtacattattagatgaa
gaatggtgtaataaaatatatagactaggaatagatgaagtgtttgtacgtagtataata
aattgtgaaactttatatggtgtttgtgtaatgtgttatggtagagatttatcgagagga
aatttagtaaagattggagaatcagtaggggtaatagcagcgcaatctataggtgaacca
ggtactcaattaactatgcgtacttttcatattggtggagcagcatcacggactttaata
aaagataatgttcaagttaagtatggtggtataataaggtttcataacatgaaagcagta
gaaagaaatgataaaaaattaatagtggtttctcgttacagcgcaatatatattattgat
aaaaaaggtagagaaaaggaatattatagattaccatatggcacagaattaaatattaga
gaaggaaagtttgttaacgctggtacaataatagctaattgggatcctcatacacatcca
ataatatcagaggtatcaggatatataaagtttattgaaatggaagaagggttgacgatg
catagtactgtagatgaaatgacaggtatatcttctatagaaatattagaaatagggagt
agaccagtatcaggtagagataaaagaccaagaattatgttacaagatgaagaagggaag
gaaatatcattaccaggttataatacaccagttcaatatagtttaccagggaaggctttg
atttcagtagaaaatggtagaaaaataggggtaggtgaaataatatcaagaatacctgta
gaagcattaggaaataaagatataacaggagggttacctcgtgtagctgatttagttgaa
gcaagaaaaccaaaagaatatgcaataatggcagaaataacaggtagaataaaatttgga
aaggaaacaaaaggtaaacgtagaataataataaattcagaagaaagcggggaaaaaaaa
gaaatattaattaataaaggccgtcaactaagtgtttttgaaggtgataaagtagagaaa
ggagaagtaatttctgatggcccaagtaatccacatgatatattacgtttattaggggta
gaggagttagcaaagtatattataaatgaaatacaagaagtatatagattacagggtgtt
ggaataaatgataaacatattgaagtaatagtaagacaaatgttacgtaaagtaaaaatt
atagattcaggagatagtaattttattaaaggtgatcaagtagaagtagtatcggtttta
gaagaaaatagaaaattatataaattgaaaaaaaaaataattatatatgaaagaatatta
ctaggaattactaaagcatcattagcaacttcatcatttatttcagcagcatcatttcaa
gaaacaacacgtgtgttaacagaagcagcagttaatggaagatatgataagttaagaggt
ttaaaagaaaatgtagtagtaggtagattaatcccagcaggaacaggtttagcatatcac
aatgaacgtcgtaggaaaaatagtaaaaagcattag
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