Candidatus Portiera aleyrodidarum TV-BCN: PTV_157
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Entry
PTV_157 CDS
T03736
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plb
Candidatus Portiera aleyrodidarum TV-BCN
Brite
KEGG Orthology (KO) [BR:
plb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTV_157 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plb03021
]
PTV_157 (rpoD)
Transcription machinery [BR:
plb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTV_157 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
RL
Motif
Other DBs
NCBI-ProteinID:
CEI59120
LinkDB
All DBs
Position
I:complement(145301..147049)
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AA seq
582 aa
AA seq
DB search
MLEILELNIKELINKGKEQGFLIYSEIFDLFDDDMTNREKIEDIICIFKEKGINIIDKIS
EEDKNYNNIEETSERNSWNKENDIRNNDPVRIYMREMGNIELLNRKGEIEIAKKIEEGTK
EIMAAIVYLPGAVDYIIEIYDLIIKESEGKISELFTGFMNLKKEDKLKKNNVLNSENYNE
GPDPILTKKIFEKIRKQNKKVKITILTYGYESKETKIELKFLSKVFSQIKLLPKHFECLL
SKVRLSIKNIRIQEKVILKYMVKYGQVSRKEFINSFIGNEANINWLDKFIYNSDKKNIIK
KYRSEILKAQKKILLEQQQINLSVVELKEINRKLLIGEYKAHKAKKEMIEANLRLVISIA
KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
IPVHMIETINRLKRLSRKMLQERGIEPTPEELSNRLEISEKKIRKIMKIAKEPISIETPI
GDDEDYYLSDVIEDNITASPIEAATDEGLVEATRNVLSELTAREAKVLRMRFGIDMNTDH
TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEALRSFIEE
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaatattagaattaaatataaaagaattaataaataaaggtaaagaacaagga
tttttgatttattcagaaatttttgatttatttgatgatgatatgactaatagagaaaaa
atagaggatatcatatgtatttttaaagaaaaaggaattaatattattgataaaatatct
gaagaagataaaaattataataatatagaagaaaccagtgaaagaaattcttggaataaa
gaaaatgatatacgtaataatgatccagtacgtatatatatgagagaaatgggaaatata
gaattattaaatagaaaaggtgaaatagaaatagcaaaaaaaatagaagaaggtactaaa
gaaattatggcagctatagtatatttaccaggagcagtggattatataatagaaatttat
gatttaataataaaagaatcagaaggcaaaatttcggagttgtttactggttttatgaat
ttaaaaaaagaagataaattaaaaaaaaataatgttttaaatagtgaaaattataatgaa
ggacccgatcctatattgacaaaaaaaatatttgaaaaaattcgtaaacaaaataaaaaa
gtaaaaataactatattaacatatgggtatgaatcaaaagaaaccaaaatagaattaaag
tttttatcaaaagtattttcacaaataaaattattgcccaaacattttgaatgtttatta
agtaaagttcgtttaagtataaaaaatataagaattcaagaaaaagtaatattaaaatat
atggtaaaatatggccaagtatcaagaaaggaatttataaatagttttataggtaatgaa
gctaatataaattggttagataaatttatatataattcagataaaaaaaatattataaaa
aaatatagaagtgagattttaaaagcacaaaaaaaaatattattagaacaacaacaaata
aatttatctgttgttgaattaaaagaaataaatagaaagttgttaataggagaatataag
gctcataaagcaaaaaaagaaatgattgaagctaatttaagattagtaatttcaattgca
aaaaaatatacaaatcgtggattacaatttttagatttaattcaagaaggtaatataggt
ttaatgaaagcagttgataaatttgaatatcgtagaggatataaattttctacatacgca
acctggtggatacgtcaagcaattactagatcaatagccgatcaagctagaacaataaga
ataccagtacatatgatagaaacaataaatagattaaaaagattatcaagaaaaatgtta
caagaaagaggtatagaacctactcctgaagaattaagtaatagactagaaatttcagaa
aagaaaataagaaaaattatgaaaattgcaaaagaacctatttcaatagaaacacctata
ggtgacgatgaagattattatttaagtgatgttatagaagataatattacagcatcacct
atagaagcagcaacagatgaaggattagtggaagcaacaagaaatgttttaagtgaatta
acagctagggaagccaaagttttaagaatgagatttggaatagatatgaatacagatcat
accttagaagaggtaggtaaacaatttgatgtaactcgtgaaagaattcgtcaaatagaa
gcaaaagcattacgtaaattaaggcatccatcacgttcagaagcattacgttcatttatt
gaagaatag
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