Candidatus Portiera aleyrodidarum AD-CAI: PAD_145
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Entry
PAD_145 CDS
T03737
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plc
Candidatus Portiera aleyrodidarum AD-CAI
Pathway
plc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAD_145 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plc03021
]
PAD_145 (rpoB)
03400 DNA repair and recombination proteins [BR:
plc03400
]
PAD_145 (rpoB)
Enzymes [BR:
plc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAD_145 (rpoB)
Transcription machinery [BR:
plc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAD_145 (rpoB)
DNA repair and recombination proteins [BR:
plc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAD_145 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
KOW2_Spt5
Motif
Other DBs
NCBI-ProteinID:
CEI58709
UniProt:
A0A8D9JR40
LinkDB
All DBs
Position
I:complement(135452..139531)
Genome browser
AA seq
1359 aa
AA seq
DB search
MVYSYTEKKCIRKNFGKIPHLVDVPYLLEIQIESYKKFLQNEKKSEKKKNIGINAALNSI
FPIKSLSGKSILEYLDYKLMKPLFDVKECQIRGMTYSTNLRVKMRLVIFDEFEKKRIIKY
IKEQEVYMGDIPLMTKNGTFVINGTERVVVSQLHRSPGLFFDYDQNKSNSIGKLIATARI
IPSRGSWLDFEFDQRDNIYVRIDRRKKIPVTVLLRALGLNNEKILKSFFEINTFNIKDKN
NIYWEDFNPSKLRGEIASLNIRDPILNKVIIEEGCRITQKKILKLKELNIKKLKVPLEYL
LGKVLVNKQVNKNTKENICNSNNKISLELLNKLFKHKIKKIKTLYINHLDTGSFISDTLK
IDTTNSQMEAILEISSIMRPGEPPNKDTAELIFKSLFLSLERYDLSEVGRMKFNRRLNRL
KNKGSGILNANDIIDVIKELIKIRNGFGVIDDIDHLGNRRVRSVGEMAENNLKAGLLRVE
KSIRERLFLTETDVKIMPKDLINAKPITASMKEFFISSQLSQFMDQNNPLAEITHKRRIS
ALGPGGLTRDRAGFEVRDVHSTHYGRLCPIETPEGPNIGLINSLATYSKINKYGFLETPY
RRVVKNKVTKEVIHLSAIEESDYVIAQASAKVNKNKELIDDLVQVRNKGETTFMQSTQVN
LMDVSPCQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLIGTGMEKVVAKD
SGVCILAKRSGIVEFVDAKRIVIRVNEKEIKENEICVDIYNLKKYMRSNQNTCQNQRTIV
NEGDKIKVGDILADGTAVETGDLALGQNMRIAFMPWNGYNYEDSIIISERVVKEDRFTTI
HIQELNCISRDTKLGPEEITSDIPNVSESALSKLDESGIVYIGAEIKAGDIIVGKVTPKG
ENKLTPEEKLLRAIFGDKASDVKDTSLRANSGTVGTVIDVQIFTRDGIKKDLRAREIEKR
KIEEISKDLKEAFCITEEATIKRLKLAIKGKEAFKGPNIKKGEIVDEEYLKKLNYIKWYK
LKMKDENLNKKIKKTKDQIEKLHEEMERYFIEKKRKLIQCDDLAPGILKIVKVFLAIKRK
IQTGDKMAGRHGNKGVISAIKPVEDMPFDEKGEPVDIVLNPLGVPSRMNVGQILETHLGM
AAHCLGLELEKLLKNISKPKEIRKLIDKIYNKTGGCKEKIDILTDNELRNLAKILSKGVP
IASPVFDGATEKEIKGLLKMAGVPESGQLRLFDGRTGEKFDREVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRVGEMEVWALEAYGAAYTLQEMLTVKSDDVGGR
TKIYKSIVDGDYTMQAGMPESFNVLVKEIRSLGIDVEME
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggtttattcatatactgagaaaaaatgtattcgtaaaaattttggtaaaatccctcat
cttgttgatgtaccgtacttgttagaaattcagattgaatcatataaaaaatttttacaa
aatgaaaaaaaaagtgaaaaaaagaaaaatataggaataaatgccgcattaaattcaata
tttcctataaaaagtttatctggaaaatctatattagaatatttagattataaattaatg
aagccattatttgatgtaaaagagtgtcagatacgaggaatgacatattctacaaattta
cgagtaaaaatgaggttagtaatttttgatgaatttgaaaaaaaaagaattataaaatat
ataaaagaacaagaagtatatatgggtgatataccattaatgactaaaaatgggacattt
gtgataaatggcacagaacgggtagtagtttctcaattgcatcgaagcccaggcttattt
tttgattatgatcaaaataaaagtaattcgataggaaaattaatagcaacagcaagaata
ataccttctcgtggttcttggttagattttgaatttgatcaacgtgataatatctatgtt
agaatagatagaagaaagaaaattcctgtcactgtcttattacgtgcattaggtttaaat
aatgaaaaaatattaaaaagtttttttgaaattaatacttttaatattaaagataaaaat
aatatttattgggaagattttaatccttctaaattaagaggagaaatagcaagtttgaat
ataagagatcctatattaaataaagttataatagaagaaggatgtagaataactcagaaa
aaaattttaaaattaaaagaattaaatataaaaaaattaaaagtcccactagaatattta
ttaggaaaagtattagttaataaacaggttaataaaaatacaaaagaaaatatatgtaat
agtaataataaaataagtttagaacttttaaataaattatttaaacataagataaaaaaa
ataaaaacattatatataaatcatttagatactggttcttttatatcagatacattaaaa
atagatacaacaaattcacaaatggaagcaatattggaaatctctagtataatgagacct
ggagaaccgccaaataaagatacagcagaattaatatttaaaagtttatttttatctctt
gaacgttatgatctttcagaagtaggaagaatgaaatttaatagaagattaaatagatta
aaaaataaaggtagtgggatattaaatgctaatgatataatagatgtaattaaagaatta
ataaaaattagaaatgggtttggtgtaatagatgatatagatcatttaggcaatagaaga
gttcgtagtgttggagaaatggcagaaaataatttaaaagcaggcttattacgtgtagaa
aaatcaatacgagaaaggttatttttaacagaaacagatgtaaaaataatgcctaaagat
ttaataaatgcaaaacctattactgcctctatgaaagaatttttcatttcaagtcaatta
tcacaatttatggatcaaaataacccgttggctgaaataacccacaaaagaagaatatca
gctttaggaccagggggtttaacaagagatagagctggatttgaagttcgggatgttcat
tcaactcattatggaagattatgtcctatcgaaactcctgaaggaccaaatataggttta
ataaattctttagcgacatatagtaaaataaataaatatggttttttagaaactccttac
agaagagtagtaaaaaataaagttacaaaagaagtaatccatttatctgcaatagaagaa
tcagattatgtaattgcacaagcttctgcaaaagttaataaaaataaagaattaatagat
gatttagtacaagtaagaaataaaggtgaaacaacttttatgcaatcaactcaagtaaat
ttaatggatgtttcaccgtgtcaaatagtttcagtagctgctgctttaattccttttcta
gaacatgacgatgctaacagggctttaatgggttcaaatatgcaaagacaggcagttcca
acattaagatcagaaaaacctttaataggtaccggtatggaaaaggtagtagctaaagat
tctggggtatgtatattggctaaacgtagtgggattgtagaatttgtagatgcaaaaaga
attgttattcgtgtaaatgaaaaagaaataaaagaaaatgaaatttgtgtagatatatat
aacttaaaaaaatatatgcgttctaatcaaaatacatgtcaaaatcaaagaacaatagta
aatgaaggagataaaataaaagtaggagatattttagctgatggcacagcagtagagaca
ggcgacttagcgttaggacaaaatatgagaatagcgtttatgccttggaatggttataat
tatgaagattctattataatttcagaaagagtagtaaaagaagatagatttactactatt
catatacaagaattaaattgtatatctcgtgatacaaaattaggtccagaagaaattaca
tcagatataccaaacgttagtgaatctgctttaagtaaattagatgaatcagggatagtt
tatataggagctgaaattaaagcaggagatattatagtaggtaaagtaacacctaaaggt
gaaaataaattaacccccgaagaaaaattattacgtgctatatttggtgataaagcgtca
gatgtaaaagacacatctttacgtgcaaattcaggaactgtaggaacggtaatagatgta
caaatttttacaagagatggaataaaaaaagatttaagagcaagagaaatagaaaaaaga
aaaatagaagaaataagtaaagatttaaaagaagctttttgtataacagaagaagcaaca
ataaaaagattaaaattagcaataaaaggtaaagaagcttttaaaggtccaaatataaaa
aaaggtgagatagtcgatgaggaatatttaaaaaaattaaattatatcaaatggtataaa
ttaaaaatgaaagatgagaatttaaataaaaaaataaaaaaaactaaagatcaaatagaa
aaactacacgaagaaatggaaaggtattttatagaaaaaaaacgaaaattaattcaatgt
gatgatttagcgccaggaattttaaaaattgtaaaagtttttttagctataaaaagaaaa
atccaaactggtgataaaatggcaggtcgtcatggtaataaaggagtaatatcagctata
aaacctgtagaagatatgccttttgatgaaaaaggtgaaccagtagatattgtgctgaac
cctttgggtgttccttctcgaatgaatgttggacaaatattagaaacacatttgggaatg
gcagctcattgtttaggtttagaacttgagaaactgttaaaaaatattagtaaaccaaaa
gaaataaggaaattaatagataaaatttataataaaacaggagggtgtaaagaaaaaata
gatattttaactgataatgaactaagaaatttagctaaaattttatcaaaaggagtgcct
attgcatccccagtttttgacggcgcaacagaaaaagaaataaaagggttattaaaaatg
gcaggagtaccagaatcaggacaattaagattatttgatggacggacaggagaaaaattt
gatagagaagtaacagtaggttatatgtatatgttaaaattaaatcatttagtggatgat
aaaatgcatgcgcgttcaactggatcatattcattagtaactcaacaacctttgggtgga
aaagctcaatttggaggacaaagagttggggaaatggaagtatgggctttagaagcttat
ggagcagcttatacattacaagaaatgttaaccgttaaatcagatgatgtaggagggcgt
acaaaaatctataaaagtattgtagatggagattatactatgcaggccggtatgcctgaa
tcatttaacgtattagtaaaagaaattagatcattaggtatagatgtagaaatggaatga
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integrated database retrieval system
