Palleronia sp. LCG004: RVY76_05500
Help
Entry
RVY76_05500 CDS
T09465
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plcg
Palleronia sp. LCG004
Pathway
plcg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RVY76_05500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plcg03400
]
RVY76_05500 (mfd)
Enzymes [BR:
plcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RVY76_05500 (mfd)
DNA repair and recombination proteins [BR:
plcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RVY76_05500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_30
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOI57240
UniProt:
A0AAU0HSX2
LinkDB
All DBs
Position
complement(1137342..1140812)
Genome browser
AA seq
1156 aa
AA seq
DB search
MSTPNHITMGGAPEGFDASLVLSELAKSEGAVVHVARDDKRLAAMQMALGFYDPGLPVFV
FPAWDCLPYDRVSPNADISAQRMAALAALVHGMPKRFVLLTTVNAATQRIPARDVLKDAA
FVAEVGKRVDEAALRDFFVRMGFTQSPTVLEPGDYAIRGGIIDVWPPGDGGPVRMDFFGD
TLDGARRFDPGSQRTTEKLDLVELAPVSEVILDEAAITRFRQAYRIEFGAAGTDDPLYEA
VSAGKKHAGIEHWLGFFHDKLETIFDYLPKATICLDDQVTPARLARWEGVSDQYDNRHDA
MTKKGRVDSVYKPAPPELLYLDDDAWVAATKAHRTIRFHPLAQASGPNVVDAGGRIGRNF
SPERQQENVSLFGALAEHIAAKRKEGQVIVASYSEGARERLSGLLEDEDVSGMTEIRDFR
DVPDGKGGLFLAVWGLDHGFEGGSGDAHVTVISEQDVLGDRLVRKTPKTRRAENFLTEAQ
SLSPGDLIVHVDHGVGRYTGLEVVTAAGAAHECILLEYAGGDRLYLPVENIELLSRFGHE
EGTLDKLGGGAWQAKKARLKERLREIADRLIRVAAERLLRKAPALDPPDHAWEDFSARFP
YDETDDQMKAIEDVMTDMGSGTPMDRLVVGDVGFGKTEVAMRAAFIAAMSGTQVAVIAPT
TLLARQHYKSFAERFRGFPVEVRQLSRFVSKKDSDLARERMADGKCDIVIGTHALLAKTV
KFKNLGLLVIDEEQHFGVNHKERLKQLRTDVHVLTLTATPIPRTLQLSLTGVRDLSIIGT
PPVDRLAIRTYVSEFDALTIREALLREHYRGGQSFIVVPRIKDLPEMEEFLKNEVPEITY
VTANGQMAAGELDDRMNAFYDGAYDVLLATTIVESGLDIPTANTMVIHRADMFGLSQLYQ
IRGRVGRAKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDSLGAGFTLASQDLDIRGAGNL
VGEEQSGQIREVGYELYQSMLEETIAKLKSGELEGIDGLEELGEWSPQINLGVAVLIPEE
YVPDLDVRLGLYRRLSELTTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAECKRAGI
AKLDAGPKGATIQFWGDKFGNPEGLVKFIENQKGQAKVKDNKIVVRRDWSKDADKIKGSF
AIAQDLRRALKEGEDA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccgaaccacatcaccatgggcggcgcgccggagggattcgacgcgagcctc
gttctttccgaactcgcgaaatccgaaggggcggtcgtccacgtcgcccgcgacgacaag
cgcctcgccgcgatgcagatggcgctcggattctacgatcccggcctgccggtcttcgtg
tttccggcctgggattgtctgccctacgaccgcgtgtcgcccaatgccgacatttcggcg
cagcggatggcggcgctggccgcgctggttcacggaatgcccaagcggttcgtgttgttg
acaactgtcaacgccgccactcagcgcattcccgcgcgcgacgtgctgaaggatgcggcc
ttcgtggccgaggtcggcaagcgcgtggacgaggcggccttgcgcgacttcttcgtgcgg
atggggttcacgcaatcgccgacggtcctcgagccgggcgactacgccatccgcgggggc
atcatcgacgtctggccgccgggcgatggcgggccagtccggatggacttcttcggcgac
acgctcgacggggcgcgccgcttcgatccgggctcgcagcgcacgacggaaaagctcgac
ctcgtcgaactggccccggtgagcgaggtgatcctcgacgaggcggcgatcacgcgcttc
cgccaggcctatcgcatcgagttcggcgcggccggtacggacgatccgctttatgaagcg
gtaagcgcgggcaagaaacatgcggggatcgagcactggctgggctttttccacgacaag
ctcgagacgatcttcgactacctgcccaaggccacgatctgtctcgacgatcaagtgacg
ccggcccggcttgcccggtgggaaggggtgagcgaccagtacgacaaccgtcacgatgcg
atgacgaagaagggtcgcgtggattcggtctacaagcccgcaccgcccgagctgctctat
ctcgacgacgatgcctgggtcgcggcgacgaaggctcaccggacgatccggttccacccg
ctcgcgcaggcgtcgggaccgaatgtcgtagatgcgggcggtcggatcggccgcaacttc
tcgccggagcggcagcaggagaacgtgagccttttcggggcgctggccgagcacatcgcc
gcgaagcgcaaggaggggcaggtgatcgtcgcctcctactccgaaggggcgcgcgaacgg
ctttcggggcttctggaggacgaggacgtctcgggcatgaccgagatccgcgatttccgc
gacgtgccggacggcaagggcggcctgttcctcgcggtctgggggcttgatcacgggttc
gagggcggttcgggcgacgcgcatgtcaccgtcatctccgagcaggacgtcctgggcgac
aggctggtgcgcaagacgcccaagacgcgccgtgccgagaacttcctgaccgaggcgcaa
tcgctgagcccgggcgacctgatcgtccatgtcgatcacggcgtcggacggtataccggg
ctggaggtcgtgacagcggcgggtgccgcgcatgaatgtatcctgctcgaatatgccggg
ggcgacaggctctatctccccgtcgagaatatcgagcttctgagccgcttcggtcacgag
gagggcacgctcgacaagctcggcggcggggcatggcaggcgaagaaggccaggctgaag
gagcggctgcgggagatcgccgacaggctcatccgggtggccgcggaacggcttctgagg
aaggcacctgcgctcgatccgccggatcacgcatgggaggatttctcggcgcgctttccc
tatgacgagaccgacgaccagatgaaggccatcgaggacgtcatgaccgacatggggtcg
gggacgcccatggaccggctggtcgtgggcgatgtgggcttcggcaagaccgaggtcgcg
atgcgcgcggccttcatcgcggcgatgtctggaacgcaggtcgcggtgatcgcgcccacc
acgctgctcgcgcggcagcattacaaatcctttgccgaacgctttcgcggctttccggtc
gaggtgcgccagctgtcgcggttcgtgtcaaagaaggactccgatctggcacgcgaacgg
atggccgacggcaaatgcgacatcgtgatcggcacgcatgcgcttctcgccaagaccgtg
aagttcaagaatctcgggcttctcgtcatcgacgaggagcagcatttcggcgtcaaccac
aaggaacggctgaagcagctcaggaccgatgtccacgtcctgaccctgaccgcgacaccc
attccgcgtaccttgcaactgagccttaccggcgtgcgggacctgagcatcatcggcacg
ccgccggtcgatcgcctggcgatccgcacctatgtgagcgagttcgacgcgctgacgatc
cgtgaggcgcttttgcgcgagcattatcgcggcgggcagagcttcatcgtcgttccgcgc
atcaaggaccttcccgagatggaggagttcctcaagaacgaagtgcccgagatcacctat
gtcaccgccaacggacagatggcggcgggcgaactcgacgacaggatgaacgcattctac
gacggggcctacgacgtcctgctggcgacgacgatcgtggaatccggcctcgacattcca
acggccaatacgatggtgatccaccgcgccgacatgttcggcctgtcgcagctctaccag
atccgcggacgcgttggtcgcgccaagacgcgcgcctatgcgtatctcaccacgaaaccg
cgtgcgaagctgaccgatacggcgcagaagcgtctgcgcgtgctcgggtcgctcgacagt
ctcggggcgggctttacgctcgccagtcaggacctcgatattcggggggcgggcaacctg
gtcggcgaagagcagtcgggccagatccgcgaggtcgggtacgaactctatcaatcgatg
ctcgaggagacgattgccaagctgaaatcgggcgagctcgaagggatcgacgggctcgag
gagctcggcgaatggagtccccagatcaatctgggcgtggccgttctcatccccgaggag
tacgtgccggacctcgacgtgcggctgggtctgtaccggaggctgtcggagctgacgacc
aaggtcgagctcgaggggttcgcggcggagctcatcgaccggttcggcaagctgccgaag
gaggtcaacacgctgctcctcgtcgtccggatcaaggccgagtgcaagcgggcgggtatc
gccaagctcgatgcggggccgaagggcgcgacgatccagttctggggcgacaagttcggt
aacccggagggcctcgtgaagttcatcgagaaccagaagggtcaggccaaggtcaaggac
aacaagatcgtggttcggcgcgactggtcgaaggatgccgacaagatcaagggatccttc
gccatcgcccaggatctgcggcgcgcgctcaaggaaggcgaggacgcctga
DBGET
integrated database retrieval system
