Palleronia sp. LCG004: RVY76_08555
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Entry
RVY76_08555 CDS
T09465
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
plcg
Palleronia sp. LCG004
Brite
KEGG Orthology (KO) [BR:
plcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plcg03016
]
RVY76_08555 (rnd)
Enzymes [BR:
plcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RVY76_08555 (rnd)
Transfer RNA biogenesis [BR:
plcg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RVY76_08555 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Sf6_terminase
Motif
Other DBs
NCBI-ProteinID:
WOI55111
UniProt:
A0AAU0HK95
LinkDB
All DBs
Position
complement(1766286..1767443)
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AA seq
385 aa
AA seq
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MMTITTTEALANFCARAATAPYVTVDTEFLRERTYYSKLCLIQLAIPGNDEEDAVLVDPL
VEGLSLDPIYDLFRDESVVKVFHAARQDLEIFCIEGGVIPAPLFDTQVAAMVCGFGEQVG
YETLVRKIAKGNIDKSSRFTDWSRRPLTDAQKSYALADVTHLRDIYEHLSAELARSGRTE
WVEEELSVLTDPETYRIAPRDAWRRVKTRTQSGRFMAILRELAAFREEYAQARNVPRSRV
YKDDALIELASTKPSSEKDLARSRLLLREARKGEIADGILAAVQAGLEVDPKDFPETDNV
RDKLQVNPALADLLRVLLKAKAETAGVAQKLIATSADLDTIAAGGREVQALSGWRKKVFG
RDAIRMCEGRVGLKAQGNDVVVFEL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgatcaccacgaccgaagcgcttgcaaatttctgcgcccgcgctgccactgcc
ccctacgtcaccgtcgataccgaattcctgcgcgagcggacctactactccaagctctgc
ctgatccagcttgcgatcccgggaaatgacgaggaagacgcggttctggtcgatccactc
gtggagggcctctctctcgatccgatctacgacctcttccgcgacgaaagcgtcgtgaag
gtcttccatgccgcccgtcaggatcttgaaatcttttgcatcgagggtggcgtgatccct
gcacccctgttcgatacgcaggtcgccgcaatggtctgcggctttggcgaacaggttggt
tacgagacgctggtccgcaagatcgccaagggcaacatcgacaagtccagccgctttacc
gactggtcgcggcgtcccctgacggatgcgcagaaatcctacgccttggcggacgtgact
catcttcgtgatatctatgaacatctttcggccgagcttgcgcgatccggccgcaccgaa
tgggtcgaggaggagctgtcggttcttaccgatcctgaaacctatcgcattgcgccccgt
gacgcttggcgacgggtcaagacgcgcacgcagtcgggccggttcatggccattctgaga
gagctcgccgcgttccgcgaggaatatgcgcaagcccgtaacgtgccgcgcagccgtgtt
tacaaggacgacgcgctgatcgaacttgcatcgaccaaaccgtcatcagagaaggatctc
gcgcggtcgaggcttctcctgcgcgaagcccgcaaaggcgagatcgccgacggaattctc
gctgccgtgcaagcggggctcgaggtggatcctaaggattttcccgagacggacaacgtt
cgcgacaagctgcaggtgaaccccgcgcttgccgatctgctgcgcgtgcttctgaaggcc
aaggcggaaacggcaggcgtcgcgcagaagctgatcgcgacctcggccgatctcgacacg
atcgcggccggcgggcgcgaggttcaggccctttcggggtggcgcaagaaggtcttcgga
cgcgatgcgatccggatgtgcgaaggacgcgtcggtctgaaggcgcagggcaacgacgtg
gtggtcttcgagctctga
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