Candidatus Portiera aleyrodidarum TV: PalTV_026
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Entry
PalTV_026 CDS
T02521
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pld
Candidatus Portiera aleyrodidarum TV
Pathway
pld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PalTV_026 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pld03021
]
PalTV_026 (rho)
03019 Messenger RNA biogenesis [BR:
pld03019
]
PalTV_026 (rho)
Transcription machinery [BR:
pld03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PalTV_026 (rho)
Messenger RNA biogenesis [BR:
pld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PalTV_026 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AGI27025
LinkDB
All DBs
Position
28194..29453
Genome browser
AA seq
419 aa
AA seq
DB search
MNLNELKKKNVHELLTLAISMKIDNILRSRKQDIIFAILKKQAKGGEDIYGEGVLEILQE
GFGFLRSADSSYQAGPDDIYVSPSQIRRFNLRKGDSIYGKIRPPKEGERYFALLKVNKIN
FDRIETVKQKILFENLTPLFPNYRLMMEIGNGSTEDLTSRILDLVAPIGKGQRGLIVAPP
KAGKTMMMQNIANAIVRNSPECYLIFLLIDERPEEVTEMSRTVRGEVIASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVIMLDSITRLARAYNTVVPSSGKVLTGGVDSNALEKPKRF
FGVARNIEEGGSLTILASALIDTGSKMDDIIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLCSEEEIQRMWILRKLLHTMEDVAATELLIDRLKNTKNNIDFFESMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgaacttaaaaaaaaaaatgtacatgaattattaacattagctatatct
atgaagatagataatatattacgttctagaaaacaagatattatatttgctattctaaaa
aaacaagctaaaggtggagaagatatttatggagaaggagttttagaaattttacaagaa
ggttttggctttttaagaagtgctgatagttcttatcaagccggccctgatgatatatat
gtttctccatcacaaattcgacggtttaatttacgtaaaggtgatagtatttatggtaaa
atacgtcctccaaaagagggtgaaagatattttgctttattaaaagtaaataaaataaat
tttgatagaatagaaactgttaaacaaaaaattttatttgaaaatttaactccattattt
cccaattatagattaatgatggaaattggtaatggttctactgaagatttaacttctaga
attttagatttagttgctcctattggtaaaggacaacgtggtttaattgtagctcctcca
aaagcaggtaaaactatgatgatgcaaaatattgctaatgctatagtacgtaatagtcct
gaatgttatttaatttttttattaattgatgaacgtcctgaagaagtaacagaaatgtct
agaacagtaagaggtgaagttatcgcctctacatttgatgaaccacctacaagacatgta
caagtagctgaaatggttattgaaaaagctaaaagattagttgaacataaaaaagatgta
gttataatgttagattctattactagattagcaagagcgtacaatacagtagttccttct
tcgggtaaagtcttaacagggggagtggattcaaatgctcttgaaaaacctaaaagattt
tttggtgtcgcacgtaatatagaagaaggtggaagtttaactattttagcatctgcttta
atagatactggatcaaaaatggatgatataatttttgaagaatttaaaggtacaggtaat
atggaagcacatttagatcgtaaattagctgaaaaaagagtttttcctgcaataaatatt
agacgttctggtactcgtagagaggatttattatgtagtgaagaagaaatacaacgtatg
tggattttacggaaattattacatacaatggaagatgtagcagcaacagaattattaata
gatagattaaaaaatactaaaaataatatagacttttttgaatcaatgaaaagaagataa
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