Candidatus Portiera aleyrodidarum TV: PalTV_035
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Entry
PalTV_035 CDS
T02521
Symbol
rne
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pld
Candidatus Portiera aleyrodidarum TV
Pathway
pld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PalTV_035 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pld03019
]
PalTV_035 (rne)
03009 Ribosome biogenesis [BR:
pld03009
]
PalTV_035 (rne)
Enzymes [BR:
pld01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PalTV_035 (rne)
Messenger RNA biogenesis [BR:
pld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PalTV_035 (rne)
Ribosome biogenesis [BR:
pld03009
]
Prokaryotic type
rRNA processing factors
PalTV_035 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGI27034
UniProt:
A0A8D3X772
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All DBs
Position
complement(38248..39891)
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AA seq
547 aa
AA seq
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MKRILINATQPEELRVALVDGQVLYDLDIEFCAKEQKKSNIYRAKIVRIEPSLEAAFVDF
GAERHGFLPIKEISNEYLLKDCNSNIRDLLKEGQELIVQVDKEERSTKGAALTTYISLAG
RFLVLMPNNPRSGGISRRITGADRFQLKEAINNLFIPKNMGIIVRTAGIGRSSKDLQCDL
NYLLQIWEAITEEANKRYAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEYIYNDALNFI
KQVMPNYQKKIKLYKDEIPLFTRFKIESQIATAYQREVKLPSGGSIFIDTTEALVSIDIN
SARATRGDDIEETALHTNLEAADELGRQLRLRDIGGLVVIDFIDMSLTRNQREVENRIRA
SIKLDSARIQVGRISRFGLMEMSRQRLRPSLRETSGIVCPRCNGQGTIRDVSSLSLSILR
LIEEEAMKDNSSKIRAVLPVSIATYLLNEKRNIIVNIELRQDVKIIIIPEPDMDTPHYAV
ERLRDDQIFGEKYSNKNLVRKKNNYIENKEKLRTEKAAVSTANHITSYNNFFSRIWKKLL
RIFRILV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaattcttattaatgcgacccaaccagaagaattaagagttgcactggtagat
ggtcaagtattatatgatttagatattgagttttgtgctaaagaacaaaaaaaatctaat
atatatcgtgctaaaattgttagaatagaacctagcttagaagcagcttttgttgatttt
ggagcagaaagacatgggtttttacctattaaagaaatatctaatgaatatttattaaag
gattgtaattctaatattagagatttacttaaagaaggtcaagaactaatagtgcaagtg
gataaagaagaacgtagtactaaaggcgctgctttaacaacttatattagtttagcaggt
agatttttagtattaatgcctaataatcctagatcaggaggtatttctagacgtattact
ggggctgataggtttcaattaaaagaagctataaataatttatttatacctaagaatatg
ggaataatagttagaacagcaggtattggccgttcaagtaaagatttacaatgtgattta
aattatttacttcaaatttgggaagcaattacagaagaagcaaataaaagatatgctcca
tttttaatatatagagaatctaatgttattattcgtgcaatgcgtgattatttaagacaa
gatataggcgaggttttaatagatagtgaatatatttataatgatgctcttaattttatt
aaacaagttatgcctaattatcaaaaaaaaattaaactttataaagatgaaatacctctt
tttactagatttaaaattgaatctcaaattgcaactgcttatcaaagagaagttaaatta
ccttcaggtggatcaatttttattgatactacagaagctttagtatctatagatattaat
tcagcacgtgctactagaggggatgatatagaagaaacagctttacacacaaatttagaa
gcagctgatgaactaggtagacaattaagattacgtgatattggtgggttagtagtaatt
gattttattgatatgtctttaacaagaaaccaaagagaagtagaaaatagaattcgtgca
tctattaaacttgatagtgcacgtattcaagtaggtcgtatttcaaggtttggtttaatg
gaaatgtctagacaacgattacgtccatctttgcgggaaactagtggtatagtatgtcca
agatgtaatggacaaggtacaatacgtgatgttagttctttatctctttctatcttacgt
ttaatagaagaagaagcgatgaaagataatagttctaaaattagagctgttttaccagta
tcaattgctacttatttattaaatgaaaaaagaaacattatagttaatatagaattaaga
caagatgtaaaaattataattataccagaaccagatatggatactccacattatgcagta
gaaagattacgtgatgatcaaatttttggagaaaaatatagtaataagaatcttgtacgt
aaaaaaaataattatatagaaaataaagaaaaacttcgtacagaaaaagcagctgttagt
actgcaaatcatattacatcatataataattttttttcacggatatggaaaaaactatta
agaatatttagaattttggtttga
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