Platalea leucorodia (Eurasian spoonbill): 309590696
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Entry
309590696 CDS
T12103
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform 1
KO
K06823
collagen type XVIII alpha
Organism
plec Platalea leucorodia (Eurasian spoonbill)
Brite
KEGG Orthology (KO) [BR:
plec00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plec04147
]
309590696 (COL18A1)
00535 Proteoglycans [BR:
plec00535
]
309590696 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
plec00536
]
309590696 (COL18A1)
Exosome [BR:
plec04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
309590696 (COL18A1)
Proteoglycans [BR:
plec00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
309590696 (COL18A1)
Glycosaminoglycan binding proteins [BR:
plec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
309590696 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
309590696
NCBI-ProteinID:
XP_082168216
LinkDB
All DBs
Position
5:complement(59238883..59279886)
Genome browser
AA seq
1504 aa
AA seq
DB search
MAPSPPRLGFLLLLACCFSSSETQLLDWIWDSMKTTGSPAAPGEGTMALEPLASVAAPTP
STSPGTWGGQVVGDVTTPQHQELDSGTAAPAGEGTEAKTTKQWDGNATGLAESMARSSIA
PPRGTSPARGQDVGSSSTKDPQLLGTDNTEDLQLLGTGPPTATGTWVSLQRPAGPRPENL
STEVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHI
QPTTPRAGMLFAITDSSQSIIYVGVKLSELQLGKQQIIFYYTEPGSPSSYVAATFTVPTL
LNQWTRFAISVEEDEVILYLDCEEHERVHFERSPDEMELEDGSGLFVAQAGGADPDKYQG
VIADLKLQGDPRAAERQCEEEEDDTEEVSGDFGSGAEGGHQPSGKDRGVPGLVDALPVTS
PPVAVGSGPRSGGGSPQHAERTRAEETLQVSAGGTGPKGEKGEKGERGLKGDSGTGSIVG
MGSVKGEKGEKGELGIKGSAGFGYPGSKGQKGEPGDPGPPGTLSRHTDSLMVEQVTGPPG
PPGKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGP
PGPPGPSSKHDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRT
DLPGPPGLPGRDGTPGPPGPAGPQGPPGRDGAAGQPGPKGERGDVGDLGLPGAPGPKGSK
GEMGPAGAPGEMGLAGLPGPIGPRGQPGPPGLPGPPGPGYEAGFGDMEGSGLPFATSSPG
PPGPEGPQGVPGLRGVKGEVGSPGQPGLPGPKGDAGVPGVDGRPGLEGFPGPQGPKGDRG
SPGEKGDRGQDGVGLPGPPGPPGPPGQVITVSSEDKSLAALPGPEGRPGHAGFPGPVGPK
GDRGSSGPQGSPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLRGPMGPSGPQGRAGM
KGEIGFPGRPGRPGMNGLKGEKGDPMDVSSVLGLRGPPGPPGPPGPPGPPGSIVYDNSNA
FSDSSHPALPAFPGFHQFPGQKGEKGDAGAPGPPGHFPYDLSHFGANLRGDKGEAGPKGE
KGEPGSTPLYGPSVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGP
PGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGTSGTSLGLRTLPTYQAMLSAVHEL
PEGSLIFLTDRQELYVRLRGGFRRVLLEEHTLVPSSALDNEVYDKLPSIHYAGPQPPLQP
HGPLHPLRNHSPPPTARPWRGDEVVANQHRLPEQPLLHHQHELLNSYYIHRRPDPAPVAA
HVHEDFQPALHLVALNAPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSI
VRRADRATVPIVNLRDEVLFSNWEALFTGSGAPLRAGARILSFDGRDVLRDAGWPQKSMW
HGSDAKGRRLPESYCETWRTEERTATGQASSLGSGKLLEQAASSCQHAFIVLCIENSFMT
AAKK
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atggctccgtccccacctcgcttggggtttctgctcctcctggcttgctgcttctcctcc
tccgaaacacagctcctggactggatttgggacagcatgaagaccacgggaagcccagca
gcacccggcgagggaaccatggcactggagccgctcgcatctgtggctgctcccaccccc
agcacgtccccagggacgtggggtggccaggtggtgggggacgtcaccaccccacagcac
caggagctggattctggcacagcagcacctgcgggtgaggggactgaggccaaaaccacc
aagcagtgggacgggaatgccacagggctggcggagagcatggcacggtcaagcatcgct
cctccccgcggcacatcacctgcccgtggccaggatgtgggcagcagctccaccaaggac
ccgcagctcctggggacagacaacacggaggacctgcagctcctggggacggggcccccc
acagcgacagggacatgggtgtctttgcagagaccagcgggtccccggccagagaacctg
agcactgaggtcagcctcctggagctgattggagatcccccgccagaggagatcctcaaa
atttatggccccgacaacaaccccggctacgtctttggccccaatgccaacacgggccag
gtggcccggtaccacctgccaagccctttctaccgggacttttccctcctgttccacatc
cagcccaccaccccccgggctggcatgctctttgccatcacggactcctcgcagagcatc
atctatgtgggcgtcaagctctcagagctccagctgggcaagcagcagatcatcttctac
tacacagagccgggctcgccaagctcatatgtagcagccaccttcaccgtgcccaccttg
ctcaatcagtggacgcgctttgccatcagcgtggaggaggacgaagtcattctctacctg
gactgtgaggagcatgagcgggtccacttcgagcgctccccagatgagatggagctggaa
gatggctcagggctctttgttgctcaggctggaggagctgacccagataaataccagggg
gtgattgccgacttgaagctgcaaggggacccacgggcagccgagcgccagtgtgaggaa
gaggaggacgacactgaggaggtctctggcgattttggcagcggggcagaaggtggacac
caaccctcggggaaagacaggggtgttccggggctggtggatgctctccccgtcacctct
ccccctgtggcagtgggcagtgggccgaggagcggcgggggctccccgcagcatgccgag
aggaccagagcagaggagacactgcaggtctccgcaggaggcaccggccccaaaggcgaa
aagggggagaagggtgagcgtggcctgaaaggggactcagggaccggcagcatcgtgggt
atgggcagtgtcaagggtgaaaagggggagaaaggagaactgggcattaagggcagtgct
ggatttggctacccgggctccaagggccagaaaggggagccgggcgatcctggcccccct
gggaccctctcgcgtcacactgacagcttgatggtggagcaagtcaccggtcccccaggg
ccgccagggaaggacggagcccctggcagggacggtgagcctggcgatcccggcgaggat
ggcaaacccggtgatatgggaccacaggggttccctgggatgccaggggagcccggtctg
aagggggagaagggtgacccaggcgtggggccgaggggaccccctggaccacctggtccc
ccgggaccaccaggaccctcctccaagcatgacaagctgaccttcatcgacatggagggc
tctggtttcggcggcgacctggagagcctgcggggtccacgagggccacccggtcctcca
gggccacccggtgtgcctggtttgccaggggaaccgggacggtttgggatgaaccgcacg
gacctgccgggacctccagggctgccgggcagggatgggacccctgggcccccggggcca
gcgggtcctcagggtcctcctggaagagacggggcggctgggcagccggggcccaaagga
gagcggggtgatgtgggtgacctcggcctccccggtgcaccgggacccaagggcagcaag
ggagaaatgggaccagcaggagccccaggagaaatggggttagctggccttcctgggccc
attggaccccgagggcagccagggccccctggtctcccgggaccaccagggccaggctac
gaggctggatttggtgacatggagggctcggggctgccattcgccaccagctcccctgga
ccacccggacctgaaggaccacagggggtgccgggactgcggggggtgaagggggaggtc
ggcagccctgggcagcctggcttgccaggaccaaagggagatgctggtgtgcccggtgtg
gacggccgccctggactggagggcttccccggaccgcagggacccaaaggtgacagaggc
agccctggtgagaagggcgatcgaggccaagatggtgtggggctgcctggcccccctggt
ccacctggtccccctggacaggtcatcactgtctcaagcgaagataagtctttggcggct
ttgcccggtccagagggtagaccgggtcacgccggcttcccgggaccggtgggaccaaaa
ggagaccggggatcgtctggtccccagggctccccaggcttgaagggagaaaagggggag
cctggcgtcatcatcagccctgatgggaccgtggtcactgcaaaggtgaaaggagaaaag
ggggagccagggctgcggggaccgatgggaccctcaggtccccagggacgagcagggatg
aaaggagagatcggctttccgggcagacctggacgtcctggcatgaacgggctgaagggc
gagaagggtgaccccatggatgtcagtagcgtgctgggcttgcggggtcccccaggaccc
ccaggccccccagggccccctgggccgcctggcagcatagtctacgacaacagcaatgcc
ttcagcgactccagccatcccgcgctgccagccttccctggtttccaccagtttccagga
caaaagggagagaaaggcgatgccggagccccaggacccccaggccacttcccctacgac
ctgagtcacttcggtgctaacctgcggggtgacaaaggggaggcaggtcccaagggcgag
aagggtgagccaggcagcaccccgctctatggtcccagcgtctctgggctgccagggcct
ccggggccccagggctatcccggactgccgggtcccaagggggacagtattgttgggcca
ccggggcctcccggacctcagggcccacccggtatcggatatgaggggcggcagggcccc
cccggccctcccggcccccctggtccaccctccttcccaggcccccacagacaagctatc
agcatccctggcccccctgggccaccgggaccccccggaccaccaggcaccagcgggaca
tccttggggctgcgcaccctgccgacctaccaggcgatgctgagcgccgtgcacgagctg
cccgagggcagcctcatcttcctgaccgaccggcaagagctctacgtccgcttgcgtggg
ggcttccgccgggtgctgctggaggagcacaccctggttcccagctcagctctggacaat
gaggtgtacgacaagctccccagcatccactacgctggcccccagccccccctccagccc
catggacctctgcacccgctccgcaaccacagcccccctcccactgcccgaccctggcgc
ggggatgaggtggtggccaaccagcaccgcctgcctgaacaacccctgctccatcaccag
catgaactcctcaacagctactacatccaccgccggccggatccagcccccgtggccgcc
cacgtgcacgaggacttccagcccgcccttcacctggtggccctgaacgccccgctgagt
ggtggcatgcgtggtatccggggcgctgacttccagtgcttccagcaagcccggcaggtc
gggctggccggcaccttccgcgccttcctctcctcccgcctgcaggacctctacagcatc
gtgcgcagggccgaccgtgccaccgtgccaatcgtcaacctccgggacgaagtgctcttc
agtaactgggaagcccttttcacgggcagcggggccccgctgcgagctggtgcccgcatc
ctctctttcgacggccgagatgtcctgagggatgcaggatggccgcagaagagcatgtgg
cacggctcggatgccaagggccggcgcttgcccgagagctactgtgagacgtggcggaca
gaggagcgcactgccactggccaggcttcttcgctgggctccggcaagctgctggagcag
gcggccagcagctgccagcacgccttcattgtcctctgcatcgagaacagcttcatgact
gctgccaaaaagtga
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integrated database retrieval system
