Platalea leucorodia (Eurasian spoonbill): 309599935
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Entry
309599935 CDS
T12103
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
plec
Platalea leucorodia (Eurasian spoonbill)
Pathway
plec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
309599935 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plec03041
]
309599935 (DDX42)
Enzymes [BR:
plec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
309599935 (DDX42)
Spliceosome [BR:
plec03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
309599935 (DDX42)
Complex B
309599935 (DDX42)
Complex C
U2 SnRNP specific factors
309599935 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
309599935
NCBI-ProteinID:
XP_082187964
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All DBs
Position
22:3668491..3691364
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AA seq
952 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAFAKSGPPQLPSFYK
IGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFMA
EVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL
EYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNL
RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS
GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSG
PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVI
SEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSENSDHGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQK
TGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGNLSSVPTF
PSVGVQGFNPTNASTNNREGSSSSTGIAAAAGSGGSGGGSSGVGGGGVGGGVVRERYNDN
RNSRHNEVPRRGEGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHSESRHFADVGSG
NRNNGDSRNSNEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttgggtttggtggatttgcc
ataacacctggaaagaaagaggagcctaagctctctcagcagtcgcatagtgcttttgga
acagccggttcttctgcatttgcgaaatcaggacctcctcagctgccttctttctacaaa
attgggtcaaagcgagcaaattttgacgaagagaatgcgtactttgaggatgaagaggaa
gattccagcaatgtcgaattgccgtacattcccgcagagaattcccccactcgccagcag
tttcattccaaatcagcagactctgacagcgatgatgatcctctggaagcattcatggct
gaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaaaaa
aagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttatttt
cgctacatggctgaaaacccgactgctggtgtggtccaagaagaggaagaggataacctg
gagtacgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctcttcca
cctattgaccattcagagattgaatatccaccgtttgagaaaaatttctatgatgagcat
gaggagatcaccagtctcaccccgcagcaagtggtggagttacggcataagctaaatctc
cgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttgggtttgat
gagcaacttatgcatcaaattaggaaatctgagtacacccagcccactcctatacaatgt
cagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactggaagc
ggaaagacagcagccttcatctggccaatgttgattcacatcatggatcaaaaggagctt
gaaccaggggatggtcccattgcagtgattgtatgcccgaccagagagctttgccaacag
atccattctgaatgtaagcgctttggtaaggcgtataatctgcgctctgtagctgtgtat
ggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagttgtc
tgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaagagtc
acttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcaggtc
agatcaattgcaagccacgtacgtcctgacagacagacgcttttgttcagtgccactttc
cgtaagaagattgagaaattggctcgagacattctgatcgacccgattcgagttgtgcaa
ggagacatcggagaggcaaatgaagacgttactcaaattgtggagattttcccctctggc
cctagcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagcgtt
ctcctgtttgtcaccaagaaggcaaatgcagaagagctggccaataaccttaagcaggag
gatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtcatt
tcggaatttaagaaaaaggggatcccgatactggtagctactgatgtggcagctcgtggg
ttagatattccttccattaagactgtgatcaattacgatgtggctcgggacatagatacg
cacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacactctg
ctgactcccaaagacagtaacttcgctggtgatcttgtcagaaatctggaaggcgctaat
caacatgtttccaaagagctgttggatctagcaatgcagaatccgtggttccggaaatca
cgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggataccgt
gaacgtcctggtctgggatcagaaaattctgaccatggaaacaacaacagcgtgatgagt
aactacgaggcgtacaagccatccactggggcaatgggagacaggcttacggcaatgaaa
gcagcttttcagtcccagtataagagccactttgttgctgcaagcttaaataatcaaaag
actggtagctccgctgctggtgctagtggctggaccagcgccgggagcttgaactcagta
ccaacgagttcagcacagcaaaatgctgcaaatcctgacagcccaattgcagccaccgca
gcagcaaagggtgttccaggcttcacaagcacgggtaatttgagtagcgttcccaccttt
ccaagtgtcggagtacagggcttcaaccccacaaatgccagcaccaacaatcgagaaggc
agcagcagcagcaccggcatcgccgctgctgctggcagcggcggcagcggcggtggcagc
agcggtgttggcggcggtggtgttggtggcggcgttgtcagggaacgatacaatgacaac
cggaacagtcgccacaacgaggtcccgcgccgtggagagggtggtggtcgctacaatgat
gtgcaacgccacggagaaggaggtggtcgccacagtgacgcttaccgccacggagagggc
cgacacggcgacaaccatcgccacagtgaaagccggcactttgctgatgtgggcagtggc
aatcgcaataatggtgatagcaggaatagcaatgaaggtaggaacaacgagaacaggaat
ggtgagaacaggaaggatgccaacagccgagacaacaagacagatggttttgctgtccca
gagcccccaaaacgtaagaagagccggtgggacagttaa
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integrated database retrieval system
