Platalea leucorodia (Eurasian spoonbill): 309600175
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Entry
309600175 CDS
T12103
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
plec Platalea leucorodia (Eurasian spoonbill)
Pathway
plec04510
Focal adhesion
plec04512
ECM-receptor interaction
plec04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
plec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
309600175 (COL2A1)
04518 Integrin signaling
309600175 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
309600175 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plec00536
]
309600175 (COL2A1)
Glycosaminoglycan binding proteins [BR:
plec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
309600175 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
309600175
NCBI-ProteinID:
XP_082188376
LinkDB
All DBs
Position
23:complement(<2966106..>2989014)
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AA seq
1502 aa
AA seq
DB search
MSPPDGILGLAVAMPVAMPVAMPVTRVPVTRVPVAAEPPGRADAAEAGSCLQDGQSYSDK
DVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGWQPGPKGQ
KGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPG
PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQG
NPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPG
VKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARG
NDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAG
APGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG
EQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAG
PKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDG
RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG
PAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPG
ERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKG
DRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERG
EPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKG
ARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPG
LQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG
KQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVG
APGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAG
ERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIG
PPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRADEAA
GSLRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQG
CTLDAIKVFCNMETGETCVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDED
LAPNTANIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEG
NSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVC
FL
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgtccccacctgacggcatcctgggccttgcggtggccatgccggtggccatgccggtg
gccatgccggtgacgagggtgccggtgacgagggtgccggtggcggcagagcccccgggg
cgggcagacgcagccgaagcaggcagctgcctgcaggacgggcagagctatagcgataag
gacgtatggaagccggagccgtgccgtatctgcgtgtgcgacacggggaccgtcctctgc
gacgagatcatctgcgaggagctgcgggattgtcccagtcccgaaatccccttcggagag
tgctgccccatatgtcccactgaccaacccagcggttggcaacctggccccaagggacag
aagggcgaacccggtgacattaaagatgtcgtaggaccccgagggcctccgggaccgcag
ggcccggcaggcgagcagggacaacgaggggaccgcggcgagaagggggagaagggtgct
cccggcccccggggcagggatggagaacccggcacccctgggaatcccggcccccccggc
ccccccggccctcccggcccccccggcctcggcgggaactttgcggctcagatggcgggc
ggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcagggacccatgggcccc
atgggaccccgcggcccccccggaccctccggcgctcccggtccccaaggatttcaaggc
aaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccggggaccgccg
ggacctcctgggaaacccggtgatgacggcgagaccggcaaacccggcaaatccggcgag
cgcggcccccccggcccccagggtgctcgtggcttccccgggacgcccggtctccccgga
gtgaaaggccaccggggctaccccggcttggacggtgccaagggagaggcaggagctcct
ggagccaagggcgaatccggctcccctggcgagaacggctcccccggccccatgggtccc
cgcgggctgcccggcgagagaggacgtcccggcccctccggcgctgcgggtgctcgtggc
aacgatggtctccccggccccgctggaccccctggacctgtcggcccggccggagccccc
ggcttccccggcgcccccggctcaaagggtgaagctggtcccaccggcgcacgcggtccc
gagggtgcccagggtccccgcggtgaatccggcacccccggctctcctggccccgccggc
gcccccggtaacccagggactgacggcatccccggcgcgaaaggctcggcgggcgccccg
ggcatcgccggcgccccaggcttccccggcccccgcggcccgcccggcccccagggtgcc
accggcccgctgggacccaagggacagacgggagaacccggcatcgcaggcttcaaaggc
gaacaaggaccgaagggcgagacgggacccgcaggaccccaaggtgcccccgggccggct
ggcgaagaaggcaagagaggagcccgcggtgaacccggtgctgctggccccgtgggacca
cctggagagaggggtgctcccggcaatcgtggcttcccagggcaggatgggctggctgga
cccaagggtgccccgggcgagcgtggccccgccggcctcgcgggtcccaagggagccacc
ggcgaccccgggcgccccggagagcccgggctgcccggagccaggggtctcaccggccgc
ccaggcgacgctggtcctcaaggcaaagtcggcccaacgggcgctcccggcgaggacggc
cgccccggcccccccggcccgcagggtgctcgtggtcagcccggcgtgatgggtttcccc
ggtcccaaaggtgctaacggcgaacctggaaaagccggtgagaaaggactccccggtgcc
ccggggctgcggggtctccctggcaaggacggtgagacgggagctgccggccccccggga
cctgccggtcccgcgggcgagaggggagagcaaggagcccctggtccctccggcttccag
ggcctgcccgggccaccaggtccccccggagagagcggcaaacccggagatcagggtgtt
cccggagaagccggtgcccccggtctcgtcggtcccagaggcgaacgcggtttccccggt
gaacgcggctctcccggcgcacaagggctgcaaggtccccgtgggctccccggcacaccg
ggcaccgacggacccaagggtgcaaccggaccggctggccccaacggcgcccagggtccc
ccagggctgcagggaatgcccggcgagagaggagcagccggcatcgccggtcccaaagga
gaccggggagacgtcggagagaagggccccgagggagcccccggaaaggacggcgcacgc
ggtctgacgggtcccatcggtccccccggccctgctggccccaacggcgagaagggtgaa
tccggccctcctggtccatccggcgctgccggtgcccgcggtgcccccggcgagcgcggt
gagcccggtgcccccggtcctgccggatttgccggtcccccgggtgccgacgggcaacct
ggtgccaaaggcgaacaaggagagcccggacagaagggtgacgccggcgctcccggtccc
caaggtccctctggtgcacctggcccgcagggtccgactggagtaactggtcccaaagga
gcccggggtgctcagggcccccctggagccactggattccccggcgccgccggccgcgtg
ggaccacccggccctaacggtaacccaggcccccccggtccccccggctctgctggcaaa
gatggtcccaagggtgctcgtggtgatgccggtcccccgggccgtgccggtgaccccggt
ctccaaggccccgccggcccccctggcgagaaaggtgaacccggcgaggacggccctgcg
ggtcccgatggtccccccggtccccaaggtttggcaggacagcgcggcatcgttggtctt
cccggacagcgtggcgagagaggctttcccgggctgccggggccatcgggcgaacctggg
aaacaaggagcacccggctctgcaggcgaccgcggcccccccggccccgtgggtcccccc
ggtctgacaggtcccgccggcgaacccgggcgcgagggtaaccccggcgctgatggaccc
cccggcagagacggcgcagccggcgtgaagggtgatcgtggcgagaccggtcccgtaggt
gcccccggcgctcccggtgcccccggcgctcccggccccgtcggtcccaccggcaaacaa
ggagacagaggcgagacgggcgcacaaggtcccatgggtccctccggtcctgctggcgct
cgaggcatgccgggtccccaagggcctcgcggtgacaagggcgagacgggagaggctgga
gagagaggtctgaagggccaccgtggcttcaccggtctgcagggtcttcccggcccaccc
ggtccttctggagaccaaggtgctgctggtcccgcgggtccctccggtcccaggggtccc
cccggccctgtcggcccctctggcaaagacggctccaacggcatgcccggccccatcggt
cctcccggcccccgcggacgaagcggcgaaccaggtcctgcgggtcctcccggaaaccca
ggtccccccggtcctcccggcccccccggcactggcatcgacatgtcggctttcgctggc
ctgggtcagccggagaagggtcccgaccccatccgctacatgcgggcggacgaggccgcc
ggcagcctgcggcagcacgatgtcgaggtggacgccacgctcaagtccctcaacaaccag
atcgagagcatccgcagccccgagggctccaagaagaacccggccaggacctgccgcgac
atcaagctttgccatcccgagtggaagagcggagactattggatcgacccgaaccagggc
tgcaccttggacgccatcaaagttttctgcaacatggagacgggcgagacctgcgtctac
cccaaccccagcagcatccccaagaagaactggtggaccagcaagaccaaagacaagaag
cacgtctggtttgcagagaccatcaacggcggtttccactttagctacggcgatgaagac
ctggctcccaacaccgccaacatccagatgaccttcctccgcctcctgtccaccgaaggc
tcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgaggagacgggc
aacctgaagaaagccatcctcatccagggatccaacgacgtggagatcagagccgagggc
aacagcaggttcacgtacagcgtcttggaggacggttgcacgaaacacactggcaaatgg
ggcaagacagtcatcgagtaccggtcgcagaagacctcgcgcctgcccattgtagatatt
gcacctatggacattggtggagccgatcaggagtttggcgtggatattggcccagtctgc
ttcttgtaa
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