Platalea leucorodia (Eurasian spoonbill): 309604293
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Entry
309604293 CDS
T12103
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
plec Platalea leucorodia (Eurasian spoonbill)
Pathway
plec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
309604293 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plec03019
]
309604293 (SKIC2)
Enzymes [BR:
plec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
309604293 (SKIC2)
Messenger RNA biogenesis [BR:
plec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
309604293 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
309604293 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
309604293
NCBI-ProteinID:
XP_082195357
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
KRGVDYQPSAAGAGGPLSLSSLLGTLDAFELGGDEAGGGSGDPQPAGGGSPPPPLRRADS
LEELLRKEVAEPPPAPPAAPPEPPEEQWAIPIDASAPVEGFERLVPDPAFKWPFAPDPFQ
QQAALCLERGHSLLVAAHTSAGKTAVAEYAIALAQRHMTRTIYTSPIKALSNQKFRDFKA
TFGDVGLLTGDVQLRPEASCLIMTTEILRSMLYNGSDIIRDLEWVIFDEVHYINDAERGV
VWEEVLIMLPEHVKLILLSATVPNALEFAQWVGRTKRRRLRVISTRRRPVPLEHFLYTGN
SPRTRHQLFLLLDAHGNFSTQGYYAAVEAKKERTSKHAQSFGAKQPTMGGTGPGQDRGVW
LALLGLLRERGQLPVVAFTFSRSRCDEHADALGALDLVSSAEKGRVRLFFQRCVARLRGS
DRRLPQVLRMAELLQRGIGVHHGGVLPLLKEVVEMLFSQGLVKVLFATETFAMGVNMPAR
TVVFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDSTGTVIILCKGPVPEMADLHRMML
GRPTRLQSQFRLTYSMILNLLRARALRVEDMMRRSFSEFHLRRDAPAQERRVAELRRALA
ALGEPEAGGAMADLAPYHRAAQGLRQARALLQRRLAESVAGLRALAPGRVVVVCTPKHRN
ALGLILQVSPEGSSRTFTTLVLCEKPPEQGGPAGDPPHPPEAPYPEDLLLTRLFVPEGPC
GHALEKLQPGDMAGVTAKTLRVNPEKLLQELRPRQGPRPRPEPPGPEVGAAVQELARLAG
GAPGGLPLLDPVGALQLRDPEAVEAAARARALAASLGAFRCVHSPRFPQQYAQFAARQEL
LEQLEHLQFLLSDQSLLLLPEYHQRVAVLRALGYVAAGGAVALGGRLASLLSSHELVLTE
LLLGNVLAPLRPEESVALLSCMVCPGRGEPPPHLPPPLQQGVERVRAVAQRVGQLQQECG
LSQSVEEFVEQFGFGLVEVVYEWARGMPFADIARLAAVQEGAVVRCIQRLEETCREVRQA
ARLVGEPALAAKMEAASNMIKRDIVFAASLYTQ
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
aaacgcggcgtcgactaccagccctcagcggcgggggcgggggggccgctgtccctctcc
agcctcctggggaccctcgacgccttcgagctggggggggacgaggccggggggggctca
ggggacccccagcccgcgggggggggcagccccccgccccccctgcgccgcgccgacagc
ctggaggagctgctgcggaaggaggtggcggagccccccccggccccccccgccgccccc
ccggagccccccgaggagcagtgggccatccccatcgacgccagcgcccccgtcgagggc
ttcgagcggctggtccccgacccggccttcaagtggcccttcgcgcccgaccccttccag
cagcaggccgcgctctgcctggagcggggccactcgctgctggtggccgcccacacctcg
gccggcaaaaccgccgtggccgagtacgccatcgccctggcccagcgccacatgacccgg
accatctacacctcccccatcaaggcgctttccaaccagaaattccgggatttcaaggcg
acgttcggggacgtggggctgctgacgggggacgtgcagctgcgccccgaggcctcctgc
ctcatcatgaccaccgagatcctgcggtcgatgctttacaacggctccgacatcatccgg
gacctggagtgggtcatcttcgatgaggtgcactacatcaacgacgcggagcgcggcgtg
gtgtgggaggaggtgctgatcatgctgcccgagcacgtcaagctgatcctgctcagcgcc
accgtccccaacgccctcgagttcgcccagtgggtcggccgcaccaagcgccggcgcctg
cgggtgatcagcacgcggcggcgcccggtgccgctggagcatttcctctacaccggcaac
agcccccgcacccgccaccagctcttcctcctcctcgacgcccacggcaacttcagcacc
caggggtactacgcggccgtggaggccaagaaggagcggaccagcaagcacgcgcagagc
ttcggggccaagcagcccaccatggggggcaccggccccgggcaggaccggggggtctgg
ctggcgctgctggggctgctgcgggagcgcgggcagctgcccgtcgtcgccttcaccttc
tcccgcagccgctgcgacgagcacgcggacgcgctgggcgccctcgacctggtctccagc
gccgagaagggccgcgtccgcctcttcttccagcgctgcgtcgcccgcctgcgcggctcc
gaccgccgcctgccccaggtgctgcgcatggcggagctgctgcagcgcggcatcggggtg
caccacggcggggtgctgcccctgctcaaggaggtggtggagatgctcttcagccagggg
ctggtcaaggtgctcttcgccaccgagaccttcgccatgggggtgaacatgccggcccgc
accgtcgtcttcgactccatccgcaagcacgacggcaacaacttccgcgacctcctgccc
ggggagtacgtgcagatgtcggggcgcgcggggcggcgggggctggactccaccggcacc
gtcatcatcctctgcaaggggcccgtccccgagatggccgacctgcaccgcatgatgctg
ggccgccccacgcgcctgcagtcccagttccgcctcacctactccatgatcctcaacctg
ctgcgggcacgggcgctgcgcgtcgaggacatgatgcggcgcagcttctccgagttccac
ctgcggcgcgacgccccggcgcaggagcggcgggtggcggagctgcggcgggcgctggcg
gcgctgggggagccggaggccgggggggccatggccgacctggccccctaccaccgggcc
gcccaggggctgcgccaggcccgcgccctgctgcagcggcgcctggcggagtcggtggcg
gggctgcgggcgctggcgcccggccgggtggtggtggtctgcacccccaaacaccgcaac
gccctcggcctcatcctccaggtgtccccggagggctccagccgcaccttcaccacgctg
gtgctgtgcgagaagccccccgagcagggggggccggcgggggaccccccccatcccccc
gaggccccctaccccgaggacctgctgctcacccggctcttcgtgcccgagggtccgtgc
ggccacgcgctggagaagctgcagcccggggacatggcgggggtcacggccaagaccctg
cgggtgaaccccgagaagctgctgcaggagctgcggccccgccagggcccccgccccagg
ccggagccccccgggccggaggtgggggcggcggtgcaggagctggcccggctggcgggg
ggggccccgggggggctccccctcctcgacccggtgggggccctgcagctgcgggacccc
gaggccgtggaggcggccgcccgcgcccgcgccctggccgcctccctgggcgccttccgc
tgcgtccacagcccccgcttcccccagcagtacgcccagttcgccgcccggcaggagctg
ctggagcagctggagcatctccagttcctgctgtcggaccagtcgctgctgctgctgcct
gagtaccaccagcgcgtggccgtgctgcgggcgctgggctacgtggcggcggggggcgcg
gtggccctgggggggcgcctggcctcgctgctgagctcccacgagctggtgctgaccgag
ctgctgctgggcaacgtcctggccccgctgcgccccgaggagagcgtcgccctcctctcc
tgcatggtctgcccggggcgcggggagccccctccccacctgccgccccccctccagcag
ggcgtggagcgggtgcgggcggtggcgcagcgcgtggggcagctgcagcaggagtgcggc
ctcagccagagcgtcgaggagttcgtcgagcagttcggcttcggcctcgtcgaggtcgtc
tacgagtgggcccgcggcatgcccttcgcggacatcgcccggctggcggcggtgcaggag
ggggccgtggtgcgctgcatccagcggctggaggagacgtgccgggaggtgcgccaggcc
gcccgcctggtgggggagcccgccctggccgccaagatggaggccgcctccaacatgatc
aagcgcgacatcgtcttcgccgccagcctctacacccaataa
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